RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 A0A087WW49 117 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 C9JCJ5 164 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 K7EMT4 169 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 K7EN84 100 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 PEX7O00628 323 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 SIGLEC15Q6ZMC9 328 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 EXOC3-AS1Q8N2X6 119 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 C20orf78Q9BR46 151 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 TMEM126AQ9H061 195 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 SELENOKQ9Y6D0 94 aa6.16□□□□□ -1.42
CCDC39-201ENST00000442201 ANK3Q12955 4377 aaKnown RBP6.15□□□□□ -1.42
CCDC39-201ENST00000442201 SMIM9A6NGZ8 99 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 F8WDY8 70 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 HSBP1O75506 76 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 FHL3Q13643 280 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 OR9G4Q8NGQ1 327 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 OCC1Q8TAD7 63 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 PHLDA1Q8WV24 401 aaPredicted RBP6.15□□□□□ -1.42
CCDC39-201ENST00000442201 C4orf3Q8WVX3 66 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 SMAD5-AS1Q9Y6J3 95 aa6.15□□□□□ -1.42
CCDC39-201ENST00000442201 NSD1Q96L73 2696 aaPredicted RBP6.15□□□□□ -1.43
CCDC39-201ENST00000442201 APCSP02743 223 aa6.15□□□□□ -1.43
CCDC39-201ENST00000442201 GNG5P63218 68 aa6.15□□□□□ -1.43
CCDC39-201ENST00000442201 TM4SF20Q53R12 229 aa6.15□□□□□ -1.43
CCDC39-201ENST00000442201 ZFAND6Q6FIF0 208 aa6.15□□□□□ -1.43
CCDC39-201ENST00000442201 URB1-AS1Q96HZ7 61 aa6.15□□□□□ -1.43
CCDC39-201ENST00000442201 FN1P02751 2386 aaKnown RBP6.14□□□□□ -1.43
CCDC39-201ENST00000442201 IGHV7-4-1A0A0J9YVY3 117 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 RHODO00212 210 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 CT45A10P0DMU9 189 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 HOXD3P31249 432 aaPredicted RBP6.14□□□□□ -1.43
CCDC39-201ENST00000442201 FOXI1Q12951 378 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 LINC01545Q5VT33 79 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 KLHL30-AS1Q8NEE0 82 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 DNAJC30Q96LL9 226 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 C18orf15Q96N68 181 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 NAA38Q9BRA0 125 aaKnown RBP6.14□□□□□ -1.43
CCDC39-201ENST00000442201 E9PLD3 99 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 CCDC179H3BU77 68 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 TCRAP04437 139 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 INSL3P51460 131 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 SYNJ2BPP57105 145 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 C18orf65Q6ZTR6 163 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 C11orf44Q8N8P7 122 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 RHPN1-AS1Q9BWJ2 59 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 LINC01619G3V211 115 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 LGALS9O00182 355 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 CSN1S1P47710 185 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 DEFB136Q30KP8 78 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 CENPWQ5EE01 88 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 SH2D6Q7Z4S9 175 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 SYT8Q8NBV8 401 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 LINC00479Q96M42 142 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 SLC50A1Q9BRV3 221 aa6.14□□□□□ -1.43
CCDC39-201ENST00000442201 ZNF331Q9NQX6 463 aaPredicted RBP6.14□□□□□ -1.43
CCDC39-201ENST00000442201 F8P00451 2351 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 NF1P21359 2839 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 CD28P10747 220 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 ETDBQ3ZM63 59 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 SETXQ7Z333 2677 aaKnown RBP6.13□□□□□ -1.43
CCDC39-201ENST00000442201 SMIM27A0A1W2PRY6 76 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 M0R3E3 92 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 CHEK1O14757 476 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 PROK1P58294 105 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 Q6Q795 121 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 CHCHD1Q96BP2 118 aaKnown RBP6.13□□□□□ -1.43
CCDC39-201ENST00000442201 KLF12Q9Y4X4 402 aa6.13□□□□□ -1.43
CCDC39-201ENST00000442201 OR5AL1P0C617 328 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 NDUFV3P56181 108 aaKnown RBP6.12□□□□□ -1.43
CCDC39-201ENST00000442201 RPL11P62913 178 aaKnown RBP6.12□□□□□ -1.43
CCDC39-201ENST00000442201 GOLT1AQ6ZVE7 132 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 SMIM13P0DJ93 91 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 SRSF2Q01130 221 aaKnown RBP6.12□□□□□ -1.43
CCDC39-201ENST00000442201 FMC1Q96HJ9 113 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 SLURP1P55000 103 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 PRR31Q5SQ13 230 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 IGFL4Q6B9Z1 124 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 IGF2BP2-AS1Q96M15 143 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 DUX3Q96PT4 197 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 OSTCQ9NRP0 149 aa6.12□□□□□ -1.43
CCDC39-201ENST00000442201 A0A1W2PRX2 142 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 CYSRT1A8MQ03 144 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 HIST2H2BDQ6DRA6 164 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 C16orf92Q96LL3 132 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 SGK494Q96LW2 274 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 SETD2Q9BYW2 2564 aaPredicted RBP6.11□□□□□ -1.43
CCDC39-201ENST00000442201 IGHV1-24A0A0C4DH33 117 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 EDN2P20800 178 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 PEMTQ9UBM1 199 aa6.11□□□□□ -1.43
CCDC39-201ENST00000442201 TRAV8-1A0A0A6YYK1 113 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 IZUMO1RA6ND01 250 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 PRSS29PA6NIE9 313 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 H3BMG7 143 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 MGST1P10620 155 aaKnown RBP6.1□□□□□ -1.43
CCDC39-201ENST00000442201 EVI2AP22794 236 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 HLA-DMBP28068 263 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 RAB37Q96AX2 223 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 MDFICQ9P1T7 246 aa6.1□□□□□ -1.43
CCDC39-201ENST00000442201 IGKV3-7A0A075B6H7 116 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms