RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 HERVK_113P61574 105 aa6.35□□□□□ -1.39
TMEM39A-202ENST00000438581 PDE6HQ13956 83 aa6.35□□□□□ -1.39
TMEM39A-202ENST00000438581 ZNF292O60281 2723 aa6.35□□□□□ -1.39
TMEM39A-202ENST00000438581 TEX48A0A1B0GUV7 120 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 APOMO95445 188 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 SRSF9Q13242 221 aaKnown RBP eCLIP6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 DYNAPQ8N1N2 210 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 NPBQ8NG41 125 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 FXYD5Q96DB9 178 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 UQCRQO14949 82 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 LINC00477Q96M19 166 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 C8orf49Q96NF6 230 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 H3BRN7 92 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 I3L2K1 104 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 UBE2L6O14933 153 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 NDUFA7O95182 113 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 GNB1LQ9BYB4 327 aa6.34□□□□□ -1.39
TMEM39A-202ENST00000438581 IGHV3-73A0A0B4J1V6 119 aa6.34□□□□□ -1.4
TMEM39A-202ENST00000438581 NDUFA4O00483 81 aa6.34□□□□□ -1.4
TMEM39A-202ENST00000438581 C18orf32Q8TCD1 76 aa6.34□□□□□ -1.4
TMEM39A-202ENST00000438581 MYO15AQ9UKN7 3530 aa6.34□□□□□ -1.4
TMEM39A-202ENST00000438581 TNFRSF13BO14836 293 aaPredicted RBP6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 SPINK13Q1W4C9 94 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 PATE2Q6UY27 113 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 TMEM256Q8N2U0 113 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 LY96Q9Y6Y9 160 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 LINC01548A6NM66 108 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 LINC01619G3V211 115 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 C11orf71Q6IPW1 123 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 GTSCR1Q86UQ5 136 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 C3orf56Q8N813 242 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 C5orf56Q8N8D9 126 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 KLF12Q9Y4X4 402 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 CPAMD8Q8IZJ3 1885 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 HECTD1Q9ULT8 2610 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 IGLV11-55A0A075B6I3 123 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 H7C1H1 209 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 ZNF324O75467 553 aaPredicted RBP6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 GAGE13Q4V321 117 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 LINC00336Q6ZUF6 198 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 LY6G5BQ8NDX9 201 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 TMEM101Q96IK0 257 aa6.33□□□□□ -1.4
TMEM39A-202ENST00000438581 A0A1B0GUS0 222 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 FAM231BA6NCW3 169 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 F2Z2F3 143 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 F6UB75 175 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 ELANEP08246 267 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 CTSGP08311 255 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 ARMS2P0C7Q2 107 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 WFDC11Q8NEX6 87 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 ZNF414Q96IQ9 312 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 LINC00574Q9H8X3 128 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 MDFICQ9P1T7 246 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 D6R8Y8 96 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 C14orf178Q8N769 122 aaPredicted RBP6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 VGLL1Q99990 258 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 IMUPQ9GZP8 106 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 XCL2Q9UBD3 114 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 SMKR1H3BMG3 65 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 PFN1P07737 140 aaKnown RBP6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 P0C879 139 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 SCGB1C2P0DMR2 95 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 SCGB3A1Q96QR1 104 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 RNF114Q9Y508 228 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 A0A1W2PPR1 153 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 GAGE2AQ6NT46 116 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 AMN1Q8IY45 258 aa6.32□□□□□ -1.4
TMEM39A-202ENST00000438581 ADAMTS20P59510 1910 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 VPS13AQ96RL7 3174 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 TRAV12-2A0A075B6T6 113 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 IGHV3-53P01767 116 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 AJUBAQ96IF1 538 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 FOXC2Q99958 501 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 NDUFC2-KCTD14E9PQ53 114 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 H3BUT2 72 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 SAMD5Q5TGI4 173 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 ATP5L2Q7Z4Y8 100 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 TMEM75Q8N9X5 138 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 PRR25Q96S07 402 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 HOXD3P31249 432 aaPredicted RBP6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 TMEM170BQ5T4T1 132 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 TMEM14CQ9P0S9 112 aa6.31□□□□□ -1.4
TMEM39A-202ENST00000438581 TRGV11A0A075B6L2 103 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 A0A087WWL8 130 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 TRAV8-6A0A0B4J262 113 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 IGHV7-4-1A0A0J9YVY3 117 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 NDUFA3O95167 84 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 PPP1R17O96001 155 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 TRACP01848 142 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 C19orf54Q5BKX5 351 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 SERTAD4-AS1Q5TG53 156 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 ZNF295-AS1Q8N0V1 137 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 TMEM190Q8WZ59 177 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 C11orf1Q9H5F2 150 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 TRGV1A0A0A0MS02 117 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 PRSS2P07478 247 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 FANCD2OSQ96PS1 177 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 KLK9Q9UKQ9 250 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 TRGV4A0A0C4DH28 118 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 KNCNA6PVL3 124 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms