RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 GAGE1Q13065 139 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 GAGE4Q13068 117 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 GAGE5Q13069 117 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 GAGE13Q4V321 117 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 Q8N3U1 123 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 CYB561D1Q8N8Q1 229 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 RAB24Q969Q5 203 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 TMEM70Q9BUB7 260 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 GTSF1LQ9H1H1 148 aa9.7□□□□□ -0.86
SDC1-204ENST00000429035 GGTLC3B5MD39 225 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 LECT2O14960 151 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 CIDEAO60543 219 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 ATP6V0CP27449 155 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 LGALSLQ3ZCW2 172 aaPredicted RBP9.69□□□□□ -0.86
SDC1-204ENST00000429035 SH3BGRL3Q9H299 93 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 TMEM167BQ9NRX6 74 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 BOLA1Q9Y3E2 137 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 ALG5Q9Y673 324 aa9.69□□□□□ -0.86
SDC1-204ENST00000429035 RNASE3P12724 160 aaKnown RBP9.68□□□□□ -0.86
SDC1-204ENST00000429035 OR2G3Q8NGZ4 309 aa9.68□□□□□ -0.86
SDC1-204ENST00000429035 PSMG3Q9BT73 122 aaPredicted RBP9.68□□□□□ -0.86
SDC1-204ENST00000429035 TM2D2Q9BX73 214 aa9.68□□□□□ -0.86
SDC1-204ENST00000429035 PARLQ9H300 379 aa9.68□□□□□ -0.86
SDC1-204ENST00000429035 EPDR1Q9UM22 224 aa9.68□□□□□ -0.86
SDC1-204ENST00000429035 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.67□□□□□ -0.86
SDC1-204ENST00000429035 TRAV34A0A0B4J273 112 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 CXorf1O96002 111 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 MBP02144 154 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 ASIPP42127 132 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 WFDC2Q14508 124 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 OR2T35Q8NGX2 323 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 ACTR3CQ9C0K3 210 aaPredicted RBP9.67□□□□□ -0.86
SDC1-204ENST00000429035 FAM30AQ9NZY2 134 aa9.67□□□□□ -0.86
SDC1-204ENST00000429035 H3BVH4 76 aa9.66□□□□□ -0.86
SDC1-204ENST00000429035 IFNA7P01567 189 aa9.66□□□□□ -0.86
SDC1-204ENST00000429035 IGLV2-11P01706 119 aa9.66□□□□□ -0.86
SDC1-204ENST00000429035 UBE2G2P60604 165 aa9.66□□□□□ -0.86
SDC1-204ENST00000429035 LAGE3Q14657 143 aa9.66□□□□□ -0.86
SDC1-204ENST00000429035 A8MWV9 139 aa9.65□□□□□ -0.86
SDC1-204ENST00000429035 SAPCD1Q5SSQ6 148 aa9.65□□□□□ -0.86
SDC1-204ENST00000429035 LINC00479Q96M42 142 aa9.65□□□□□ -0.86
SDC1-204ENST00000429035 AQP10Q96PS8 301 aa9.65□□□□□ -0.86
SDC1-204ENST00000429035 JPT2Q9H910 190 aa9.65□□□□□ -0.86
SDC1-204ENST00000429035 ARL2-SNX15V9GYD0 113 aa9.65□□□□□ -0.86
SDC1-204ENST00000429035 MYCBP2O75592 4640 aa9.65□□□□□ -0.87
SDC1-204ENST00000429035 IGKV3D-20A0A0C4DH25 116 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 J3QL48 77 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 M0R036 132 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 FAM74A4Q5TZK3 123 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 DAZ4Q86SG3 579 aaKnown RBP9.64□□□□□ -0.87
SDC1-204ENST00000429035 Q86TA4 180 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 C14orf178Q8N769 122 aaPredicted RBP9.64□□□□□ -0.87
SDC1-204ENST00000429035 SUN5Q8TC36 379 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 MED28Q9H204 178 aa9.64□□□□□ -0.87
SDC1-204ENST00000429035 DAZ3Q9NR90 486 aaKnown RBP9.64□□□□□ -0.87
SDC1-204ENST00000429035 TRAV8-3A0A0A6YYJ7 113 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 A6NHS1 94 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 B4DEV8 164 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 PEX7O00628 323 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 SERF2P84101 59 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 TOR2AQ5JU69 321 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 SYT8Q8NBV8 401 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 PTH2Q96A98 100 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 SAMD10Q9BYL1 202 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 URGCP-MRPS24S4R325 110 aa9.63□□□□□ -0.87
SDC1-204ENST00000429035 FXYD6-FXYD2A0A087WZ82 144 aa9.62□□□□□ -0.87
SDC1-204ENST00000429035 FABP5P3A8MUU1 101 aa9.62□□□□□ -0.87
SDC1-204ENST00000429035 LINC00694P0DN24 101 aa9.62□□□□□ -0.87
SDC1-204ENST00000429035 FGF8P55075 233 aaPredicted RBP9.62□□□□□ -0.87
SDC1-204ENST00000429035 RPL7L1Q6DKI1 246 aaKnown RBP9.62□□□□□ -0.87
SDC1-204ENST00000429035 ZFP2Q6ZN57 461 aa9.62□□□□□ -0.87
SDC1-204ENST00000429035 TNFSF18Q9UNG2 199 aa9.62□□□□□ -0.87
SDC1-204ENST00000429035 DNAH8Q96JB1 4490 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 IGKV2D-24A0A075B6R9 120 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 TMSB15BA0A087X1C1 80 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 BORCS7-ASMTA0A0B4J1R7 106 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 CTXND1A0A1B0GTU2 59 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 A0A1W2PRE2 83 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 GRIFINA4D1Z8 144 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 LINC01620Q4KN68 170 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 LINC00528Q8N1L1 170 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 INO80EQ8NBZ0 244 aaPredicted RBP9.61□□□□□ -0.87
SDC1-204ENST00000429035 OR11H4Q8NGC9 324 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 BAALCQ8WXS3 180 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 Q9UF83 564 aa9.61□□□□□ -0.87
SDC1-204ENST00000429035 A0A087WWC5 75 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 A0A087WWL8 130 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 RHODO00212 210 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 PLA2G1BP04054 148 aaKnown RBP9.6□□□□□ -0.87
SDC1-204ENST00000429035 ZNF726P1Q15940 193 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 Q5BKY6 102 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 AKR1C8PQ5T2L2 129 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 DMRTA1Q5VZB9 504 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 RMI2Q96E14 147 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 ZC2HC1AQ96GY0 325 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 IL36BQ9NZH7 164 aa9.6□□□□□ -0.87
SDC1-204ENST00000429035 RBFOX3A6NFN3 312 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 M0R381 172 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 SH2D1AO60880 128 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 ARMS2P0C7Q2 107 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 220.1 ms