RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 FABP5P3A8MUU1 101 aa12.98□□□□□ -0.33
SF3A1-202ENST00000411423 SH2D1AO60880 128 aa12.98□□□□□ -0.33
SF3A1-202ENST00000411423 SLC25A29Q8N8R3 303 aa12.98□□□□□ -0.33
SF3A1-202ENST00000411423 STOML3Q8TAV4 291 aa12.98□□□□□ -0.33
SF3A1-202ENST00000411423 PTH2Q96A98 100 aa12.98□□□□□ -0.33
SF3A1-202ENST00000411423 HSPG2P98160 4391 aa12.98□□□□□ -0.33
SF3A1-202ENST00000411423 TRBV6-1A0A0K0K1D8 114 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 UMAD1C9J7I0 102 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 KRBOX1C9JBD0 128 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 LTAP01374 205 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 ORM1P02763 201 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 LGALSLQ3ZCW2 172 aaPredicted RBP12.97□□□□□ -0.33
SF3A1-202ENST00000411423 Q6ZNX1 250 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 Q6ZSN1 163 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 FMC1Q96HJ9 113 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 JPT2Q9H910 190 aa12.97□□□□□ -0.33
SF3A1-202ENST00000411423 APOBP04114 4563 aaKnown RBP12.97□□□□□ -0.33
SF3A1-202ENST00000411423 SCO2A0A1W2PP80 73 aa12.96□□□□□ -0.33
SF3A1-202ENST00000411423 GRIFINA4D1Z8 144 aa12.96□□□□□ -0.33
SF3A1-202ENST00000411423 M0R036 132 aa12.96□□□□□ -0.33
SF3A1-202ENST00000411423 CCL20P78556 96 aa12.96□□□□□ -0.33
SF3A1-202ENST00000411423 PCNPQ8WW12 178 aaKnown RBP12.96□□□□□ -0.33
SF3A1-202ENST00000411423 ZFP30Q9Y2G7 519 aa12.96□□□□□ -0.33
SF3A1-202ENST00000411423 B4DEV8 164 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 AKR1C3P42330 323 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 UBE2G1P62253 170 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 ZNF674Q2M3X9 581 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 NHLRC2Q8NBF2 726 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 SAMD10Q9BYL1 202 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 PARLQ9H300 379 aa12.95□□□□□ -0.34
SF3A1-202ENST00000411423 H3BVH4 76 aa12.94□□□□□ -0.34
SF3A1-202ENST00000411423 PFDN1O60925 122 aa12.94□□□□□ -0.34
SF3A1-202ENST00000411423 MED14OSP0DP75 135 aa12.94□□□□□ -0.34
SF3A1-202ENST00000411423 TPT1P13693 172 aaKnown RBP12.94□□□□□ -0.34
SF3A1-202ENST00000411423 ASIPP42127 132 aa12.94□□□□□ -0.34
SF3A1-202ENST00000411423 TCEAL7Q9BRU2 100 aa12.94□□□□□ -0.34
SF3A1-202ENST00000411423 Q9UF83 564 aa12.94□□□□□ -0.34
SF3A1-202ENST00000411423 H2AFB1P0C5Y9 115 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 S100A4P26447 101 aaKnown RBP12.93□□□□□ -0.34
SF3A1-202ENST00000411423 DNLZQ5SXM8 178 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 DMRTA1Q5VZB9 504 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 UFSP1Q6NVU6 142 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 TCTE3Q8IZS6 198 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 TXNDC17Q9BRA2 123 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 KRTAP17-1Q9BYP8 105 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 IL36BQ9NZH7 164 aa12.93□□□□□ -0.34
SF3A1-202ENST00000411423 TMSB15BA0A087X1C1 80 aa12.92□□□□□ -0.34
SF3A1-202ENST00000411423 TRBV6-4A0A1B0GX49 114 aa12.92□□□□□ -0.34
SF3A1-202ENST00000411423 ARMS2P0C7Q2 107 aa12.92□□□□□ -0.34
SF3A1-202ENST00000411423 KRTAP10-2P60368 255 aa12.92□□□□□ -0.34
SF3A1-202ENST00000411423 LINC01559Q495D7 138 aa12.92□□□□□ -0.34
SF3A1-202ENST00000411423 FAM162BQ5T6X4 162 aa12.92□□□□□ -0.34
SF3A1-202ENST00000411423 BTF3P20290 206 aaKnown RBP12.91□□□□□ -0.34
SF3A1-202ENST00000411423 EIF5AP63241 154 aaKnown RBP12.91□□□□□ -0.34
SF3A1-202ENST00000411423 MLST8Q9BVC4 326 aa12.91□□□□□ -0.34
SF3A1-202ENST00000411423 SCRT2Q9NQ03 307 aa12.91□□□□□ -0.34
SF3A1-202ENST00000411423 ABCA13Q86UQ4 5058 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 C16orf90A8MZG2 172 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 CIDEAO60543 219 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 DNAH10OSP0CZ25 163 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 RHOHQ15669 191 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 SPATA12Q7Z6I5 190 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 LY96Q9Y6Y9 160 aa12.9□□□□□ -0.34
SF3A1-202ENST00000411423 LINC00694P0DN24 101 aa12.89□□□□□ -0.35
SF3A1-202ENST00000411423 MGST1P10620 155 aaKnown RBP12.89□□□□□ -0.35
SF3A1-202ENST00000411423 TIRAPP58753 221 aa12.89□□□□□ -0.35
SF3A1-202ENST00000411423 RPL19P84098 196 aaKnown RBP12.89□□□□□ -0.35
SF3A1-202ENST00000411423 PIK3CD-AS1Q5SR53 167 aa12.89□□□□□ -0.35
SF3A1-202ENST00000411423 C14orf178Q8N769 122 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-202ENST00000411423 PRADC1Q9BSG0 188 aa12.89□□□□□ -0.35
SF3A1-202ENST00000411423 A8MWV9 139 aa12.88□□□□□ -0.35
SF3A1-202ENST00000411423 C1QBP02746 253 aa12.88□□□□□ -0.35
SF3A1-202ENST00000411423 FUSP35637 526 aaKnown RBP eCLIP12.88□□□□□ -0.35
SF3A1-202ENST00000411423 ZFP2Q6ZN57 461 aa12.88□□□□□ -0.35
SF3A1-202ENST00000411423 DERL1Q9BUN8 251 aa12.88□□□□□ -0.35
SF3A1-202ENST00000411423 GNG13Q9P2W3 67 aa12.88□□□□□ -0.35
SF3A1-202ENST00000411423 TRAV1-1A0A0B4J248 108 aa12.87□□□□□ -0.35
SF3A1-202ENST00000411423 SULT1A2P50226 295 aa12.87□□□□□ -0.35
SF3A1-202ENST00000411423 SH2D6Q7Z4S9 175 aa12.87□□□□□ -0.35
SF3A1-202ENST00000411423 BAGE2Q86Y30 109 aa12.87□□□□□ -0.35
SF3A1-202ENST00000411423 hCG_2014768A0A024R1R8 64 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 GAGE12JA6NER3 117 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 GAGE1Q13065 139 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 GAGE4Q13068 117 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 GAGE5Q13069 117 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 GAGE13Q4V321 117 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 C11orf52Q96A22 123 aa12.86□□□□□ -0.35
SF3A1-202ENST00000411423 A0A087WWL8 130 aa12.85□□□□□ -0.35
SF3A1-202ENST00000411423 M0R381 172 aa12.85□□□□□ -0.35
SF3A1-202ENST00000411423 S100A9P06702 114 aaKnown RBP12.85□□□□□ -0.35
SF3A1-202ENST00000411423 CRYGDP07320 174 aa12.85□□□□□ -0.35
SF3A1-202ENST00000411423 Q8N3U1 123 aa12.85□□□□□ -0.35
SF3A1-202ENST00000411423 ATP6V0E2Q8NHE4 81 aa12.85□□□□□ -0.35
SF3A1-202ENST00000411423 SFRP2Q96HF1 295 aa12.85□□□□□ -0.35
SF3A1-202ENST00000411423 IGHV3-38A0A0C4DH36 116 aa12.84□□□□□ -0.35
SF3A1-202ENST00000411423 EVI2AP22794 236 aa12.84□□□□□ -0.35
SF3A1-202ENST00000411423 RPL35P42766 123 aaKnown RBP12.84□□□□□ -0.35
SF3A1-202ENST00000411423 MANBALQ9NQG1 85 aa12.84□□□□□ -0.35
SF3A1-202ENST00000411423 MSRB1Q9NZV6 116 aa12.84□□□□□ -0.35
SF3A1-202ENST00000411423 IGLV2-8P01709 118 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms