RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 TP53TG3Q9ULZ0 132 aa10.73□□□□□ -0.69
SCAF4-202ENST00000399804 GATA1P15976 413 aaPredicted RBP10.72□□□□□ -0.69
SCAF4-202ENST00000399804 SUMO2P61956 95 aaKnown RBP10.72□□□□□ -0.69
SCAF4-202ENST00000399804 STPG4Q8N801 248 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 SMAD5-AS1Q9Y6J3 95 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 TRBV6-1A0A0K0K1D8 114 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 MRAP2Q96G30 205 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 HECTD1Q9ULT8 2610 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 PRSS2P07478 247 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 LGALS3P17931 250 aaKnown RBP10.72□□□□□ -0.69
SCAF4-202ENST00000399804 FOXI2Q6ZQN5 318 aa10.72□□□□□ -0.69
SCAF4-202ENST00000399804 TSSC4Q9Y5U2 329 aaPredicted RBP10.72□□□□□ -0.69
SCAF4-202ENST00000399804 IGKCP01834 107 aa10.71□□□□□ -0.69
SCAF4-202ENST00000399804 TEX43Q6ZNM6 134 aa10.71□□□□□ -0.69
SCAF4-202ENST00000399804 TRGV4A0A0C4DH28 118 aa10.71□□□□□ -0.7
SCAF4-202ENST00000399804 LINC01559Q495D7 138 aa10.71□□□□□ -0.7
SCAF4-202ENST00000399804 APRG1Q8IVJ8 170 aa10.71□□□□□ -0.7
SCAF4-202ENST00000399804 MBD6Q96DN6 1003 aa10.71□□□□□ -0.7
SCAF4-202ENST00000399804 VPS25Q9BRG1 176 aa10.71□□□□□ -0.7
SCAF4-202ENST00000399804 DNAJC9-AS1A6NH13 148 aa10.7□□□□□ -0.7
SCAF4-202ENST00000399804 KLF5Q13887 457 aaPredicted RBP10.7□□□□□ -0.7
SCAF4-202ENST00000399804 RIPPLY3P57055 190 aa10.7□□□□□ -0.7
SCAF4-202ENST00000399804 CHTOPQ9Y3Y2 248 aaKnown RBP10.7□□□□□ -0.7
SCAF4-202ENST00000399804 HTN3P15516 51 aa10.7□□□□□ -0.7
SCAF4-202ENST00000399804 COTL1Q14019 142 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 DMXL2Q8TDJ6 3036 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 C19orf54Q5BKX5 351 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 NEGR1Q7Z3B1 354 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 Q8N8P6 123 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 C1QTNF4Q9BXJ3 329 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 TMEM262E9PQX1 116 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 GDF5OSQ5U4N7 250 aa10.69□□□□□ -0.7
SCAF4-202ENST00000399804 TMEM61Q8N0U2 210 aa10.68□□□□□ -0.7
SCAF4-202ENST00000399804 CRIP1P50238 77 aa10.68□□□□□ -0.7
SCAF4-202ENST00000399804 LINC00310P59036 64 aa10.68□□□□□ -0.7
SCAF4-202ENST00000399804 CD300EQ496F6 205 aaPredicted RBP10.68□□□□□ -0.7
SCAF4-202ENST00000399804 ZC2HC1BQ5TFG8 222 aa10.68□□□□□ -0.7
SCAF4-202ENST00000399804 IGLV2-11P01706 119 aa10.68□□□□□ -0.7
SCAF4-202ENST00000399804 IGHV3-16A0A0C4DH30 117 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 SDHAF1A6NFY7 115 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 PIFOQ8TCI5 191 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 CITED2Q99967 270 aaPredicted RBP10.67□□□□□ -0.7
SCAF4-202ENST00000399804 DSCAML1Q8TD84 2053 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 F8W735 103 aaPredicted RBP10.67□□□□□ -0.7
SCAF4-202ENST00000399804 SMIM2Q9BVW6 85 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 A0A1B0GXF2 115 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 IGLC3P0DOY3 106 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 CD28P10747 220 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 C2orf66Q6UXQ4 117 aa10.67□□□□□ -0.7
SCAF4-202ENST00000399804 PHLDA1Q8WV24 401 aaPredicted RBP10.67□□□□□ -0.7
SCAF4-202ENST00000399804 SPAG8Q99932 426 aaPredicted RBP10.67□□□□□ -0.7
SCAF4-202ENST00000399804 PSMB2P49721 201 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 HIST2H2BDQ6DRA6 164 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 GTF2H5Q6ZYL4 71 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 DLX4Q92988 240 aaPredicted RBP10.66□□□□□ -0.7
SCAF4-202ENST00000399804 PSMB8P28062 276 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 LINC00173Q6ZV60 143 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 TMEM86BQ8N661 226 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 TP73-AS1Q9UF72 201 aa10.66□□□□□ -0.7
SCAF4-202ENST00000399804 IGKV3D-20A0A0C4DH25 116 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 CTRLP40313 264 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 PLA2G2AP14555 144 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 RPL36AP83881 106 aaKnown RBP10.65□□□□□ -0.7
SCAF4-202ENST00000399804 RPL36ALQ969Q0 106 aaKnown RBP10.65□□□□□ -0.7
SCAF4-202ENST00000399804 C20orf173Q96LM9 149 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 DMXL1Q9Y485 3027 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 TMEM238LA0A1B0GVL6 79 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 A6NJY4 79 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 IGLL1P15814 213 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 TRPT1Q86TN4 253 aaKnown RBP10.65□□□□□ -0.7
SCAF4-202ENST00000399804 TMEM101Q96IK0 257 aa10.65□□□□□ -0.7
SCAF4-202ENST00000399804 ZNF747Q9BV97 191 aa10.65□□□□□ -0.71
SCAF4-202ENST00000399804 CLPSL1A2RUU4 121 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 LINC01549A6NIU2 74 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 DEFB130BP0DP73 79 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 DEFB130AP0DP74 79 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 H7C2G1 150 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 CFHR3Q02985 330 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 Q6ZSV7 163 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 TRAV8-2A0A0B4J237 113 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 GAGE10A6NGK3 116 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 TP53TG1Q9Y2A0 90 aa10.64□□□□□ -0.71
SCAF4-202ENST00000399804 A0A0J9YX75 114 aa10.63□□□□□ -0.71
SCAF4-202ENST00000399804 IGLV1-40P01703 118 aa10.63□□□□□ -0.71
SCAF4-202ENST00000399804 C4orf3Q8WVX3 66 aa10.63□□□□□ -0.71
SCAF4-202ENST00000399804 ZNF702PQ9H963 129 aa10.63□□□□□ -0.71
SCAF4-202ENST00000399804 A8MWV9 139 aa10.63□□□□□ -0.71
SCAF4-202ENST00000399804 IGHV3-64A0A075B6Q5 118 aa10.63□□□□□ -0.71
SCAF4-202ENST00000399804 CCL25O15444 150 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 MPV17L2Q567V2 206 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 Q8N1Y9 231 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 C3orf56Q8N813 242 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 RNASE8Q8TDE3 154 aaKnown RBP10.62□□□□□ -0.71
SCAF4-202ENST00000399804 LOC107984156A0A0G2JMH3 177 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 RHODO00212 210 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 MRPS12O15235 138 aaKnown RBP10.62□□□□□ -0.71
SCAF4-202ENST00000399804 ARL17AQ8IVW1 177 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 RPL39LQ96EH5 51 aaKnown RBP10.62□□□□□ -0.71
SCAF4-202ENST00000399804 DMDP11532 3685 aa10.62□□□□□ -0.71
SCAF4-202ENST00000399804 MRPL16Q9NX20 251 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms