RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 CUL9Q8IWT3 2517 aa7.56□□□□□ -1.2
PTCHD4-202ENST00000398738 G3V318 75 aa7.56□□□□□ -1.2
PTCHD4-202ENST00000398738 TSPAN13O95857 204 aa7.56□□□□□ -1.2
PTCHD4-202ENST00000398738 C2orf66Q6UXQ4 117 aa7.56□□□□□ -1.2
PTCHD4-202ENST00000398738 SMIM2Q9BVW6 85 aa7.56□□□□□ -1.2
PTCHD4-202ENST00000398738 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 PRR30Q53SZ7 412 aaPredicted RBP7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 TMEM170BQ5T4T1 132 aa7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 C1orf122Q6ZSJ8 110 aa7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 CFAP126Q5VTH2 177 aa7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 Q6ZUT4 128 aa7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 CELSR1Q9NYQ6 3014 aa7.55□□□□□ -1.2
PTCHD4-202ENST00000398738 IGHV7-4-1A0A0J9YVY3 117 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 SUMO2P61956 95 aaKnown RBP7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 TAL2Q16559 108 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 ANAPC13Q9BS18 74 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 PHLDA3Q9Y5J5 127 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 SPG11Q96JI7 2443 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 CUBNO60494 3623 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 DUSP14O95147 198 aaKnown RBP7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 TCL1BO95988 128 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 PLA2G1BP04054 148 aaKnown RBP7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 ZNF672Q499Z4 452 aaPredicted RBP7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 PSMG4Q5JS54 123 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 PRR9Q5T870 116 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 Q6ZS92 163 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 NOTCH3Q9UM47 2321 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 TRBV20-1A0A075B6N2 111 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 F5H697 171 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 LY6LH3BQJ8 138 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 BAALCQ8WXS3 180 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 CARD19Q96LW7 228 aa7.54□□□□□ -1.2
PTCHD4-202ENST00000398738 B5MCH6 92 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 F6UB75 175 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 BUB3O43684 328 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 RASL10AQ92737 203 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 CNFNQ9BYD5 112 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 GNRH2O43555 120 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 SCGB2A1O75556 95 aa7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 RPL39P62891 51 aaKnown RBP7.53□□□□□ -1.2
PTCHD4-202ENST00000398738 SRD5A1P18405 259 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 Q1RN00 199 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 TCTEX1D4Q5JR98 221 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 TRAV8-2A0A0B4J237 113 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 C11orf86A6NJI1 115 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 A8MWV9 139 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 RNASE4P34096 147 aaKnown RBP7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 TRPT1Q86TN4 253 aaKnown RBP7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 C9JAW5 83 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 ANKRD29Q8N6D5 301 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 RNF5Q99942 180 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 JPT2Q9H910 190 aa7.52□□□□□ -1.21
PTCHD4-202ENST00000398738 A0A087WWL8 130 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 IGHV7-81A0A0B4J1V7 117 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 CRIP2P52943 208 aaPredicted RBP7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 ORMDL2Q53FV1 153 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 FAM74A4Q5TZK3 123 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 NEXN-AS1Q8NBZ9 246 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 IGHV3OR16-10A0A075B7F0 116 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 IGHV4-39P01824 125 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 PPDPFLQ8WWR9 84 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 ZFHX3Q15911 3703 aa7.51□□□□□ -1.21
PTCHD4-202ENST00000398738 B9A039 149 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 ATP6V0E1O15342 81 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 COX8CQ7Z4L0 72 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 VMO1Q7Z5L0 202 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 PIP4P1Q86T03 277 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 METTL26Q96S19 204 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 OPRPNQ99935 248 aaPredicted RBP7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 TP53TG1Q9Y2A0 90 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 ZNF256Q9Y2P7 627 aaPredicted RBP7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 BSNQ9UPA5 3926 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 TRAV2A0A0B4J234 112 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 TEN1Q86WV5 123 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 TEX29Q8N6K0 151 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 ZNF48Q96MX3 618 aaPredicted RBP7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 LINC01546A6NGU7 62 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 TMEM219Q86XT9 240 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 NDUFA11Q86Y39 141 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 TOMM6Q96B49 74 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 DOPEY2Q9Y3R5 2298 aa7.5□□□□□ -1.21
PTCHD4-202ENST00000398738 ZNF292O60281 2723 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 NPBQ8NG41 125 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 OR11H6Q8NGC7 330 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 SLC50A1Q9BRV3 221 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 MUC6Q6W4X9 2439 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 CFC1BP0CG36 223 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 CFC1P0CG37 223 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 TSPEAR-AS2P59090 65 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 KHDC1LQ5JSQ8 128 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 ZFAND6Q6FIF0 208 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 C20orf173Q96LM9 149 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 C2CD3Q4AC94 2353 aa7.49□□□□□ -1.21
PTCHD4-202ENST00000398738 IGKV3-20P01619 116 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 ZNF688P0C7X2 276 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 TRAV12-1A0A0B4J245 112 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 CLPSL1A2RUU4 121 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 IGHV3-11P01762 117 aa7.48□□□□□ -1.21
PTCHD4-202ENST00000398738 NPC2P61916 151 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms