RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 PRSS29PA6NIE9 313 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 KRBOX1C9JBD0 128 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 TEX46H3BTG2 121 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 K7EQD1 137 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 M0R036 132 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 RS1O15537 224 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 GYPEP15421 78 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 ZNF506Q5JVG8 444 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 CFAP126Q5VTH2 177 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 C9orf62Q8N4C0 152 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 NHLRC2Q8NBF2 726 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 PCNPQ8WW12 178 aaKnown RBP16.31■□□□□ 0.2
SHMT1-204ENST00000395682 MANBALQ9NQG1 85 aa16.31■□□□□ 0.2
SHMT1-204ENST00000395682 NEGR1Q7Z3B1 354 aa16.3■□□□□ 0.2
SHMT1-204ENST00000395682 GATA1P15976 413 aaPredicted RBP16.29■□□□□ 0.2
SHMT1-204ENST00000395682 SRIP30626 198 aa16.29■□□□□ 0.2
SHMT1-204ENST00000395682 LYPD5Q6UWN5 251 aa16.29■□□□□ 0.2
SHMT1-204ENST00000395682 BAGE2Q86Y30 109 aa16.29■□□□□ 0.2
SHMT1-204ENST00000395682 GRIFINA4D1Z8 144 aa16.28■□□□□ 0.2
SHMT1-204ENST00000395682 CIDEAO60543 219 aa16.28■□□□□ 0.2
SHMT1-204ENST00000395682 IL36BQ9NZH7 164 aa16.28■□□□□ 0.2
SHMT1-204ENST00000395682 DNLZQ5SXM8 178 aa16.27■□□□□ 0.2
SHMT1-204ENST00000395682 FAT2Q9NYQ8 4349 aa16.27■□□□□ 0.19
SHMT1-204ENST00000395682 TMSB15BA0A087X1C1 80 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 IGHV3-73A0A0B4J1V6 119 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 LOC100131303A0A0U1RQF7 123 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 A0A1B0GVG6 124 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 H3BVH4 76 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 LINC01559Q495D7 138 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 ZNF575Q86XF7 245 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 C6orf223Q8N319 242 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 MLST8Q9BVC4 326 aa16.26■□□□□ 0.19
SHMT1-204ENST00000395682 NXPH4O95158 308 aa16.25■□□□□ 0.19
SHMT1-204ENST00000395682 ARMS2P0C7Q2 107 aa16.25■□□□□ 0.19
SHMT1-204ENST00000395682 RPL35P42766 123 aaKnown RBP16.25■□□□□ 0.19
SHMT1-204ENST00000395682 PIK3CD-AS1Q5SR53 167 aa16.25■□□□□ 0.19
SHMT1-204ENST00000395682 SLC25A29Q8N8R3 303 aa16.25■□□□□ 0.19
SHMT1-204ENST00000395682 TXNDC17Q9BRA2 123 aa16.25■□□□□ 0.19
SHMT1-204ENST00000395682 SIVA1O15304 175 aa16.24■□□□□ 0.19
SHMT1-204ENST00000395682 TTC32Q5I0X7 151 aa16.24■□□□□ 0.19
SHMT1-204ENST00000395682 KRTAP1-5Q9BYS1 174 aa16.24■□□□□ 0.19
SHMT1-204ENST00000395682 HECTD4Q9Y4D8 3996 aa16.24■□□□□ 0.19
SHMT1-204ENST00000395682 A0A1B0GVY2 172 aa16.23■□□□□ 0.19
SHMT1-204ENST00000395682 A8MWV9 139 aa16.23■□□□□ 0.19
SHMT1-204ENST00000395682 DMRTA1Q5VZB9 504 aa16.23■□□□□ 0.19
SHMT1-204ENST00000395682 C11orf52Q96A22 123 aa16.23■□□□□ 0.19
SHMT1-204ENST00000395682 PRADC1Q9BSG0 188 aa16.23■□□□□ 0.19
SHMT1-204ENST00000395682 TRBV6-4A0A1B0GX49 114 aa16.22■□□□□ 0.19
SHMT1-204ENST00000395682 A0A1W2PPQ1 181 aa16.22■□□□□ 0.19
SHMT1-204ENST00000395682 IFNA1P01562 189 aa16.22■□□□□ 0.19
SHMT1-204ENST00000395682 SH2D6Q7Z4S9 175 aa16.22■□□□□ 0.19
SHMT1-204ENST00000395682 SYT8Q8NBV8 401 aa16.22■□□□□ 0.19
SHMT1-204ENST00000395682 DERL1Q9BUN8 251 aa16.22■□□□□ 0.19
SHMT1-204ENST00000395682 PARLQ9H300 379 aa16.21■□□□□ 0.19
SHMT1-204ENST00000395682 JPT2Q9H910 190 aa16.21■□□□□ 0.19
SHMT1-204ENST00000395682 SCRT2Q9NQ03 307 aa16.21■□□□□ 0.19
SHMT1-204ENST00000395682 PHLDA3Q9Y5J5 127 aa16.21■□□□□ 0.19
SHMT1-204ENST00000395682 MGST1P10620 155 aaKnown RBP16.2■□□□□ 0.18
SHMT1-204ENST00000395682 MEF2BQ02080 365 aaPredicted RBP16.2■□□□□ 0.18
SHMT1-204ENST00000395682 RHOHQ15669 191 aa16.2■□□□□ 0.18
SHMT1-204ENST00000395682 PRR27Q6MZM9 219 aa16.2■□□□□ 0.18
SHMT1-204ENST00000395682 ZFP2Q6ZN57 461 aa16.2■□□□□ 0.18
SHMT1-204ENST00000395682 PDE6DO43924 150 aa16.19■□□□□ 0.18
SHMT1-204ENST00000395682 ALKAL2Q6UX46 152 aa16.19■□□□□ 0.18
SHMT1-204ENST00000395682 Q6ZSN1 163 aa16.19■□□□□ 0.18
SHMT1-204ENST00000395682 SAMD10Q9BYL1 202 aa16.19■□□□□ 0.18
SHMT1-204ENST00000395682 BCL2P10415 239 aa16.18■□□□□ 0.18
SHMT1-204ENST00000395682 NKX2-5P52952 324 aaPredicted RBP16.18■□□□□ 0.18
SHMT1-204ENST00000395682 RPL19P84098 196 aaKnown RBP16.18■□□□□ 0.18
SHMT1-204ENST00000395682 VAX2Q9UIW0 290 aa16.18■□□□□ 0.18
SHMT1-204ENST00000395682 RAB19A4D1S5 217 aa16.17■□□□□ 0.18
SHMT1-204ENST00000395682 M0R381 172 aa16.17■□□□□ 0.18
SHMT1-204ENST00000395682 CENPWQ5EE01 88 aa16.17■□□□□ 0.18
SHMT1-204ENST00000395682 UFSP1Q6NVU6 142 aa16.17■□□□□ 0.18
SHMT1-204ENST00000395682 MED9Q9NWA0 146 aa16.17■□□□□ 0.18
SHMT1-204ENST00000395682 TNP2Q05952 138 aa16.16■□□□□ 0.18
SHMT1-204ENST00000395682 IGLV2-8P01709 118 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 BLOC1S1P78537 153 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 WFDC10BQ8IUB3 73 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 ZFP82Q8N141 532 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 SFRP2Q96HF1 295 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 BOLA1Q9Y3E2 137 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 PKD1P98161 4303 aa16.15■□□□□ 0.18
SHMT1-204ENST00000395682 MED14OSP0DP75 135 aa16.14■□□□□ 0.17
SHMT1-204ENST00000395682 BTF3P20290 206 aaKnown RBP16.14■□□□□ 0.17
SHMT1-204ENST00000395682 TAGLN2P37802 199 aaKnown RBP16.14■□□□□ 0.17
SHMT1-204ENST00000395682 GNG4P50150 75 aa16.14■□□□□ 0.17
SHMT1-204ENST00000395682 TIRAPP58753 221 aa16.14■□□□□ 0.17
SHMT1-204ENST00000395682 A0A087WWL8 130 aa16.13■□□□□ 0.17
SHMT1-204ENST00000395682 RHODO00212 210 aa16.13■□□□□ 0.17
SHMT1-204ENST00000395682 CXCL1P09341 107 aa16.13■□□□□ 0.17
SHMT1-204ENST00000395682 FAM74A4Q5TZK3 123 aa16.13■□□□□ 0.17
SHMT1-204ENST00000395682 LY96Q9Y6Y9 160 aa16.13■□□□□ 0.17
SHMT1-204ENST00000395682 TRAV9-2A0A087WT02 112 aa16.12■□□□□ 0.17
SHMT1-204ENST00000395682 C14orf178Q8N769 122 aaPredicted RBP16.12■□□□□ 0.17
SHMT1-204ENST00000395682 DAZAP1Q96EP5 407 aaKnown RBP16.12■□□□□ 0.17
SHMT1-204ENST00000395682 CRYGDP07320 174 aa16.11■□□□□ 0.17
SHMT1-204ENST00000395682 LINC00315P59091 139 aa16.11■□□□□ 0.17
SHMT1-204ENST00000395682 ATP6V0E2Q8NHE4 81 aa16.11■□□□□ 0.17
SHMT1-204ENST00000395682 GAGE12JA6NER3 117 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms