RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 Q8N8P6 123 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 ACANP16112 2415 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 IGHV3-16A0A0C4DH30 117 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 RHODO00212 210 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 APOMO95445 188 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 PAX2Q02962 417 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 Q6YL49 198 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 APRG1Q8IVJ8 170 aa11.13□□□□□ -0.63
TCOF1-202ENST00000377797 SPAG8Q99932 426 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-202ENST00000377797 NHP2Q9NX24 153 aaKnown RBP11.13□□□□□ -0.63
TCOF1-202ENST00000377797 SDHAF1A6NFY7 115 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 DNAJC9-AS1A6NH13 148 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 IGLV2-8P01709 118 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 NPSP0C0P6 89 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 C2orf66Q6UXQ4 117 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 C1orf159Q96HA4 380 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 POLR3KQ9Y2Y1 108 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-202ENST00000377797 C9orf47Q6ZRZ4 202 aa11.12□□□□□ -0.63
TCOF1-202ENST00000377797 A0A087X0K7 114 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 A8MWV9 139 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 KRTAP10-9P60411 292 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 WDFY4Q6ZS81 3184 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 ORAOV1Q8WV07 137 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 IGHV3-64A0A075B6Q5 118 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 CFHR3Q02985 330 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 NEGR1Q7Z3B1 354 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 SMIM2Q9BVW6 85 aa11.11□□□□□ -0.63
TCOF1-202ENST00000377797 ZNF815PA8K554 130 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 AVPP01185 164 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 LINC00322Q6ZN03 302 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-202ENST00000377797 TMEM86BQ8N661 226 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 C19orf71A6NCJ1 209 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 ADARB2-AS1A8MUL3 147 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 BBC3Q96PG8 261 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-202ENST00000377797 RAI1Q7Z5J4 1906 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-202ENST00000377797 NUPR1O60356 82 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 STPG4Q8N801 248 aa11.1□□□□□ -0.63
TCOF1-202ENST00000377797 TSPAN13O95857 204 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 GATA1P15976 413 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-202ENST00000377797 PLNP26678 52 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 C10orf99Q6UWK7 81 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 CITED2Q99967 270 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-202ENST00000377797 ZFAND3Q9H8U3 227 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 TP53TG1Q9Y2A0 90 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 AZU1P20160 251 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 TMEM61Q8N0U2 210 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 TRBV6-1A0A0K0K1D8 114 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 OR5A1Q8NGJ0 315 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 COPS9Q8WXC6 57 aa11.09□□□□□ -0.63
TCOF1-202ENST00000377797 SEC11AP67812 179 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 TEX43Q6ZNM6 134 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 ANKRD17O75179 2603 aaKnown RBP11.08□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE12BA1L429 117 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE7O76087 117 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE12FP0CL80 117 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE12GP0CL81 117 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE12IP0CL82 117 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 SFTA2Q6UW10 78 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 MLST8Q9BVC4 326 aa11.08□□□□□ -0.64
TCOF1-202ENST00000377797 KLF5Q13887 457 aaPredicted RBP11.08□□□□□ -0.64
TCOF1-202ENST00000377797 SNHG12Q9BXW3 62 aa11.07□□□□□ -0.64
TCOF1-202ENST00000377797 Q6ZS46 218 aa11.07□□□□□ -0.64
TCOF1-202ENST00000377797 A0A087WX48 190 aa11.07□□□□□ -0.64
TCOF1-202ENST00000377797 C10orf126Q8N4M7 172 aa11.07□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE12JA6NER3 117 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 RNASE1P07998 156 aaKnown RBP11.06□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE1Q13065 139 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE4Q13068 117 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE5Q13069 117 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 GAGE13Q4V321 117 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 DNAL4O96015 105 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 ZNF80P51504 273 aaPredicted RBP11.06□□□□□ -0.64
TCOF1-202ENST00000377797 C4orf3Q8WVX3 66 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 DLX4Q92988 240 aaPredicted RBP11.06□□□□□ -0.64
TCOF1-202ENST00000377797 C20orf144Q9BQM9 153 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 SPXQ9BT56 116 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 HSD52Q0P140 79 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 DEFB121Q5J5C9 76 aa11.06□□□□□ -0.64
TCOF1-202ENST00000377797 SIGMAR1Q99720 223 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 I3L3M4 83 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 C20orf78Q9BR46 151 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 NAA38Q9BRA0 125 aaKnown RBP11.05□□□□□ -0.64
TCOF1-202ENST00000377797 MGAQ8IWI9 3026 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 CLPSL1A2RUU4 121 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 M0R2P5 195 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 ZNRF2Q8NHG8 242 aa11.05□□□□□ -0.64
TCOF1-202ENST00000377797 MPV17L2Q567V2 206 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 IGHV3-38A0A0C4DH36 116 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 A0A0U1RRA0 63 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 MYCNOSP40205 109 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 ZNF479Q96JC4 524 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 TRAV8-2A0A0B4J237 113 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 SAMD5Q5TGI4 173 aa11.04□□□□□ -0.64
TCOF1-202ENST00000377797 TRAV13-1A0A0B4J241 112 aa11.03□□□□□ -0.64
TCOF1-202ENST00000377797 CDPF1Q6NVV7 123 aa11.03□□□□□ -0.64
TCOF1-202ENST00000377797 A0A0J9YX75 114 aa11.03□□□□□ -0.64
TCOF1-202ENST00000377797 VWC2LB2RUY7 222 aa11.03□□□□□ -0.64
TCOF1-202ENST00000377797 PLA2G2AP14555 144 aa11.03□□□□□ -0.64
TCOF1-202ENST00000377797 CTRLP40313 264 aa11.03□□□□□ -0.64
TCOF1-202ENST00000377797 UBE2V1Q13404 147 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms