RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 REG4Q9BYZ8 158 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 COL16A1Q07092 1604 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-202ENST00000375405 SDHAF1A6NFY7 115 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 C12orf77C9JDV5 145 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 PRO1854Q9UHT4 67 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 COL11A1P12107 1806 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-202ENST00000375405 H3BQ85 93 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 K7EMI3 77 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 C1orf158Q8N1D5 194 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 BTAF1O14981 1849 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 PATJQ8NI35 1801 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 TMEM200BQ69YZ2 307 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 WFDC13Q8IUB5 93 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 ATAD5Q96QE3 1844 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 TRBV7-6A0A0J9YX20 115 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 C3orf84H3BNL1 204 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 LINC01559Q495D7 138 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 BCORQ6W2J9 1755 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 RGPD3A6NKT7 1758 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-202ENST00000375405 RGPD4Q7Z3J3 1758 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 MLANAQ16655 118 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 KIAA1551Q9HCM1 1747 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 TMEM213A2RRL7 107 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 DANCRP0C864 163 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 C10orf55Q5SWW7 151 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 ZNF706Q9Y5V0 76 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-202ENST00000375405 PLXNB2O15031 1838 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 NGFRP08138 427 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 CRYGSP22914 178 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 COX7BP24311 80 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 C18orf12Q96KH6 178 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 PKD1L3Q7Z443 1732 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 PLXNB3Q9ULL4 1909 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 A0A087WWC5 75 aa3.69□□□□□ -1.82
SCN1A-202ENST00000375405 IGHV7-81A0A0B4J1V7 117 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 SPRY2O43597 315 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 C16orf74Q96GX8 76 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 HS3ST6Q96QI5 342 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 ZNF831Q5JPB2 1677 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 CISD3P0C7P0 127 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 MED14OSP0DP75 135 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 IGLL1P15814 213 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 DAND5Q8N907 189 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 ATOX1O00244 68 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 SLURP1P55000 103 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 LOXL1Q08397 574 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-202ENST00000375405 MORN2Q502X0 79 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 SMIM20Q8N5G0 67 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 MRPL53Q96EL3 112 aaKnown RBP3.68□□□□□ -1.82
SCN1A-202ENST00000375405 OOSP1A8MZH6 123 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 ATP6V0E1O15342 81 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 CCL20P78556 96 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 Q0VG73 95 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 SPANXDQ9BXN6 97 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 C2orf66Q6UXQ4 117 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 FGF23Q9GZV9 251 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-202ENST00000375405 PAPPAQ13219 1627 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 ARAP2Q8WZ64 1704 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 J3KT08 172 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 TMEM256-PLSCR3K7ERE1 68 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 CRYGBP07316 175 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 RPL34P49207 117 aaKnown RBP3.68□□□□□ -1.82
SCN1A-202ENST00000375405 ESRGQ1W209 222 aa3.68□□□□□ -1.82
SCN1A-202ENST00000375405 POM121L12Q8N7R1 296 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 DENND4CQ5VZ89 1909 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 TRAV26-1A0A087WT03 109 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 A0A0B4J2C4 111 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 RIPPLY2Q5TAB7 128 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 DLEC1Q9Y238 1755 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 DEFB131BA0A096LNP1 70 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 PMAIP1Q13794 54 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 ZNF843Q8N446 348 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 ZNF501Q96CX3 271 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-202ENST00000375405 CLUHP3Q96NS8 147 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 PRR25Q96S07 402 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 MRPL35Q9NZE8 188 aaKnown RBP3.67□□□□□ -1.82
SCN1A-202ENST00000375405 G3V318 75 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 K7EQD1 137 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 TPSG1Q9NRR2 321 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 GREB1LQ9C091 1923 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-202ENST00000375405 LY75O60449 1722 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 IGKV2-28A0A075B6P5 120 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 K7ERJ3 54 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 IGKV2D-28P01615 120 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 XGP55808 180 aa3.67□□□□□ -1.82
SCN1A-202ENST00000375405 TMEM263Q8WUH6 116 aaKnown RBP3.67□□□□□ -1.82
SCN1A-202ENST00000375405 IGHV1-69DA0A0B4J2H0 117 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 IGHV1-69P01742 117 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 ZNF708P17019 499 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 COL8A2P25067 703 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 PATE2Q6UY27 113 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 WNK3Q9BYP7 1800 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 DNAJC9-AS1A6NH13 148 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 HLA-DMBP28068 263 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 SDIM1Q6ZPB5 146 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 CSNK1G2-AS1Q8NCQ2 148 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 OCC1Q8TAD7 63 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 PTPRFP10586 1907 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 TNRC6CQ9HCJ0 1690 aaKnown RBP3.66□□□□□ -1.82
SCN1A-202ENST00000375405 A0A0G2JNJ9 132 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms