RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 H3BRM9 83 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 PPP1R17O96001 155 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 AMMECR1LQ6DCA0 310 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 C10orf99Q6UWK7 81 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 TOMM6Q96B49 74 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 ODF3Q96PU9 254 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 CELSR2Q9HCU4 2923 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 MGPP08493 103 aa16.57■□□□□ 0.24
UPF3A-201ENST00000351487 PLNP26678 52 aa16.57■□□□□ 0.24
UPF3A-201ENST00000351487 FAM159AQ6UWV7 190 aa16.57■□□□□ 0.24
UPF3A-201ENST00000351487 GTSCR1Q86UQ5 136 aa16.57■□□□□ 0.24
UPF3A-201ENST00000351487 TMEM160Q9NX00 188 aa16.57■□□□□ 0.24
UPF3A-201ENST00000351487 KIF25-AS1Q9Y6Z4 181 aa16.57■□□□□ 0.24
UPF3A-201ENST00000351487 TGFAP01135 160 aa16.55■□□□□ 0.24
UPF3A-201ENST00000351487 LINC00315P59091 139 aa16.55■□□□□ 0.24
UPF3A-201ENST00000351487 VPREB3Q9UKI3 123 aa16.55■□□□□ 0.24
UPF3A-201ENST00000351487 C9orf118A6NHY6 69 aa16.54■□□□□ 0.24
UPF3A-201ENST00000351487 FSHBP01225 129 aa16.54■□□□□ 0.24
UPF3A-201ENST00000351487 TTTY13Q9BZ97 58 aa16.54■□□□□ 0.24
UPF3A-201ENST00000351487 F8VRH5 84 aa16.54■□□□□ 0.24
UPF3A-201ENST00000351487 ACACBO00763 2458 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 IGHV4OR15-8A0A075B7B6 117 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 A0A087WW49 117 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 H7C1H1 209 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 RPL32P62910 135 aaKnown RBP16.53■□□□□ 0.24
UPF3A-201ENST00000351487 SCGB3A1Q96QR1 104 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 ANKRD17O75179 2603 aaKnown RBP16.53■□□□□ 0.24
UPF3A-201ENST00000351487 K7EQG2 157 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 CHAC1Q9BUX1 264 aa16.53■□□□□ 0.24
UPF3A-201ENST00000351487 MYO18BQ8IUG5 2567 aa16.52■□□□□ 0.24
UPF3A-201ENST00000351487 TRBV25-1A0A075B6N4 114 aa16.52■□□□□ 0.24
UPF3A-201ENST00000351487 A0A0J9YX75 114 aa16.52■□□□□ 0.24
UPF3A-201ENST00000351487 LGALS9O00182 355 aa16.52■□□□□ 0.24
UPF3A-201ENST00000351487 LGALS1P09382 135 aaKnown RBP16.52■□□□□ 0.24
UPF3A-201ENST00000351487 ZNF688P0C7X2 276 aa16.52■□□□□ 0.24
UPF3A-201ENST00000351487 NEXN-AS1Q8NBZ9 246 aa16.52■□□□□ 0.24
UPF3A-201ENST00000351487 MAP1AP78559 2803 aaPredicted RBP16.52■□□□□ 0.23
UPF3A-201ENST00000351487 SNRPD3P62318 126 aaKnown RBP16.51■□□□□ 0.23
UPF3A-201ENST00000351487 RNASE8Q8TDE3 154 aaKnown RBP16.51■□□□□ 0.23
UPF3A-201ENST00000351487 ELANEP08246 267 aa16.51■□□□□ 0.23
UPF3A-201ENST00000351487 COX6B1P14854 86 aa16.51■□□□□ 0.23
UPF3A-201ENST00000351487 C2orf66Q6UXQ4 117 aa16.51■□□□□ 0.23
UPF3A-201ENST00000351487 TRAV12-3A0A0B4J271 114 aa16.5■□□□□ 0.23
UPF3A-201ENST00000351487 CD7P09564 240 aa16.5■□□□□ 0.23
UPF3A-201ENST00000351487 Q6YL49 198 aa16.5■□□□□ 0.23
UPF3A-201ENST00000351487 MAPK1IP1LQ8NDC0 245 aa16.5■□□□□ 0.23
UPF3A-201ENST00000351487 CSTL1Q9H114 145 aa16.5■□□□□ 0.23
UPF3A-201ENST00000351487 C9orf85Q96MD7 179 aa16.49■□□□□ 0.23
UPF3A-201ENST00000351487 ZNF702PQ9H963 129 aa16.49■□□□□ 0.23
UPF3A-201ENST00000351487 CRYBG3Q68DQ2 2970 aa16.49■□□□□ 0.23
UPF3A-201ENST00000351487 CR1P17927 2039 aa16.49■□□□□ 0.23
UPF3A-201ENST00000351487 JMJD8Q96S16 334 aa16.49■□□□□ 0.23
UPF3A-201ENST00000351487 CHTOPQ9Y3Y2 248 aaKnown RBP16.49■□□□□ 0.23
UPF3A-201ENST00000351487 SYNJ2BPP57105 145 aa16.48■□□□□ 0.23
UPF3A-201ENST00000351487 WFDC12Q8WWY7 111 aa16.48■□□□□ 0.23
UPF3A-201ENST00000351487 UBE2E2Q96LR5 201 aa16.48■□□□□ 0.23
UPF3A-201ENST00000351487 USP9YO00507 2555 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-201ENST00000351487 RNF152Q8N8N0 203 aa16.47■□□□□ 0.23
UPF3A-201ENST00000351487 BAALCQ8WXS3 180 aa16.47■□□□□ 0.23
UPF3A-201ENST00000351487 IGHV3-16A0A0C4DH30 117 aa16.47■□□□□ 0.23
UPF3A-201ENST00000351487 IGHV4-31P0DP07 118 aa16.47■□□□□ 0.23
UPF3A-201ENST00000351487 SUMO4Q6EEV6 95 aa16.47■□□□□ 0.23
UPF3A-201ENST00000351487 UFSP1Q6NVU6 142 aa16.47■□□□□ 0.23
UPF3A-201ENST00000351487 H3BUT2 72 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 PRB1P04280 392 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 GCSHP23434 173 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 POLR2KP53803 58 aaKnown RBP16.46■□□□□ 0.23
UPF3A-201ENST00000351487 FXYD2P54710 66 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 CBY1Q9Y3M2 126 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 UTP20O75691 2785 aaKnown RBP16.46■□□□□ 0.23
UPF3A-201ENST00000351487 LINC01549A6NIU2 74 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 MAPKAPK5-AS1Q8N8E1 139 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 TM2D2Q9BX73 214 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 JPT2Q9H910 190 aa16.46■□□□□ 0.23
UPF3A-201ENST00000351487 GAGE10A6NGK3 116 aa16.45■□□□□ 0.22
UPF3A-201ENST00000351487 HOXD3P31249 432 aaPredicted RBP16.45■□□□□ 0.22
UPF3A-201ENST00000351487 CDKN1BP46527 198 aa16.45■□□□□ 0.22
UPF3A-201ENST00000351487 GTF2H5Q6ZYL4 71 aa16.45■□□□□ 0.22
UPF3A-201ENST00000351487 RBX1P62877 108 aa16.44■□□□□ 0.22
UPF3A-201ENST00000351487 FBN2P35556 2912 aa16.44■□□□□ 0.22
UPF3A-201ENST00000351487 DUSP14O95147 198 aaKnown RBP16.43■□□□□ 0.22
UPF3A-201ENST00000351487 TAL2Q16559 108 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 CEND1Q8N111 149 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 CYSLTR1Q9Y271 337 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 PRRC2AP48634 2157 aaKnown RBP16.43■□□□□ 0.22
UPF3A-201ENST00000351487 TRAV12-2A0A075B6T6 113 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 A0A087WWL8 130 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 SMIM13P0DJ93 91 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 CST9LQ9H4G1 147 aa16.43■□□□□ 0.22
UPF3A-201ENST00000351487 TRBV6-5A0A0K0K1A5 114 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 GAGE12BA1L429 117 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 K7EP34 96 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 NEGR1Q7Z3B1 354 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 RAB37Q96AX2 223 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 DOPEY2Q9Y3R5 2298 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 AGRNO00468 2067 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 PRSS29PA6NIE9 313 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 IGKV3-20P01619 116 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 FOXI2Q6ZQN5 318 aa16.42■□□□□ 0.22
UPF3A-201ENST00000351487 Q8N1Y9 231 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms