RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DNLZQ5SXM8 178 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 LGALS9CQ6DKI2 356 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 OR4C5Q8NGB2 326 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 DAZAP1Q96EP5 407 aaKnown RBP11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 ZNF479Q96JC4 524 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 IL36BQ9NZH7 164 aa11.13□□□□□ -0.63
CCDC28A-201ENST00000332797 TRGV4A0A0C4DH28 118 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 ARMS2P0C7Q2 107 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 ZNF575Q86XF7 245 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 POM121L12Q8N7R1 296 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 BIN3Q9NQY0 253 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 NDUFS6O75380 124 aaKnown RBP11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 SRP19P09132 144 aaKnown RBP11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 FHL2Q14192 279 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 PTH2Q96A98 100 aa11.12□□□□□ -0.63
CCDC28A-201ENST00000332797 RYR2Q92736 4967 aa11.11□□□□□ -0.63
CCDC28A-201ENST00000332797 C19orf71A6NCJ1 209 aa11.11□□□□□ -0.63
CCDC28A-201ENST00000332797 OCC1Q8TAD7 63 aa11.11□□□□□ -0.63
CCDC28A-201ENST00000332797 SMIM7Q9BQ49 75 aa11.11□□□□□ -0.63
CCDC28A-201ENST00000332797 PHLDA3Q9Y5J5 127 aa11.11□□□□□ -0.63
CCDC28A-201ENST00000332797 RYR3Q15413 4870 aa11.11□□□□□ -0.63
CCDC28A-201ENST00000332797 MUC4Q99102 2169 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 K7EN84 100 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 RS1O15537 224 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 P01737 135 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 CXCL1P09341 107 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 P0DMU3 169 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 FAM231AP0DMU4 169 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 FAM231CP0DMU5 169 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 CFAP126Q5VTH2 177 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 SYT8Q8NBV8 401 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 OR2D3Q8NGH3 330 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 VSIG2Q96IQ7 327 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 PRO0255Q9UI72 69 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 HHLA3Q9XRX5 114 aa11.1□□□□□ -0.63
CCDC28A-201ENST00000332797 M0R381 172 aa11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 PAX4O43316 350 aa11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 SRSF3P84103 164 aaKnown RBP11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 SLAQ13239 276 aa11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 PEA15Q15121 130 aa11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 UBE2DNLQ8IWF7 75 aa11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 SCRT2Q9NQ03 307 aa11.09□□□□□ -0.63
CCDC28A-201ENST00000332797 IGHV3-73A0A0B4J1V6 119 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 ZNF727A8MUV8 499 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 H3BNG1 76 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 MED14OSP0DP75 135 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 CRYBA4P53673 196 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 DMRTA1Q5VZB9 504 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 VPS13DQ5THJ4 4388 aa11.08□□□□□ -0.64
CCDC28A-201ENST00000332797 A8MWV9 139 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 C9JQL5 133 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 GZMBP10144 247 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 RPS20P60866 119 aaKnown RBP11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 PIK3CD-AS1Q5SR53 167 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 COMMD7Q86VX2 200 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 ZFP82Q8N141 532 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 NUDT10Q8NFP7 164 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 NUDT11Q96G61 164 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 RNASE7Q9H1E1 156 aaKnown RBP11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 SMDT1Q9H4I9 107 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 HYDINQ4G0P3 5121 aa11.07□□□□□ -0.64
CCDC28A-201ENST00000332797 UQCC3Q6UW78 93 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 OR10AG1Q8NH19 301 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 JPT2Q9H910 190 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 LY96Q9Y6Y9 160 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 MUC21A0A0G2JKD1 596 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 MUC21A0A140T8X8 626 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 XKRY2A2RUG3 117 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 SNAI2O43623 268 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 GATA1P15976 413 aaPredicted RBP11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 TPPP3Q9BW30 176 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 ICOSQ9Y6W8 199 aa11.06□□□□□ -0.64
CCDC28A-201ENST00000332797 NACAE9PAV3 2078 aa11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 A0A096LPF7 62 aa11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 CIDEAO60543 219 aa11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 OR5AL1P0C617 328 aa11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 LINC01551Q86U37 167 aa11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 FER1L6-AS1Q8NA97 138 aa11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 SSBP4Q9BWG4 385 aaPredicted RBP11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 RPP21Q9H633 154 aaKnown RBP11.05□□□□□ -0.64
CCDC28A-201ENST00000332797 SSTP61278 116 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 RNF212Q495C1 297 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 FAM74A3Q4VXF1 159 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 FAM74A4Q5TZK3 123 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 SPANXN1Q5VSR9 72 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 SFRP2Q96HF1 295 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 SAMD10Q9BYL1 202 aa11.04□□□□□ -0.64
CCDC28A-201ENST00000332797 A0A087WWL8 130 aa11.03□□□□□ -0.64
CCDC28A-201ENST00000332797 NXPH4O95158 308 aa11.03□□□□□ -0.64
CCDC28A-201ENST00000332797 IGLC6P0CF74 106 aa11.03□□□□□ -0.64
CCDC28A-201ENST00000332797 GYPEP15421 78 aa11.03□□□□□ -0.64
CCDC28A-201ENST00000332797 CCL18P55774 89 aa11.03□□□□□ -0.64
CCDC28A-201ENST00000332797 ZFP2Q6ZN57 461 aa11.03□□□□□ -0.64
CCDC28A-201ENST00000332797 LOC100131303A0A0U1RQF7 123 aa11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 K7EQD1 137 aa11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 RHODO00212 210 aa11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 GATCO43716 136 aaKnown RBP11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 ERVFC1-1P60608 527 aa11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 MRPL23Q16540 153 aaKnown RBP11.02□□□□□ -0.65
CCDC28A-201ENST00000332797 TMEM241Q24JQ0 296 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms