RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 KRTAP10-3P60369 221 aa12.55□□□□□ -0.4
DDX41-201ENST00000330503 TDRG1Q3Y452 100 aa12.55□□□□□ -0.4
DDX41-201ENST00000330503 MAP6D1Q9H9H5 199 aa12.55□□□□□ -0.4
DDX41-201ENST00000330503 SETXQ7Z333 2677 aaKnown RBP12.54□□□□□ -0.4
DDX41-201ENST00000330503 HLA-DRB4P13762 266 aa12.54□□□□□ -0.4
DDX41-201ENST00000330503 LINC00173Q6ZV60 143 aa12.54□□□□□ -0.4
DDX41-201ENST00000330503 PHLDA3Q9Y5J5 127 aa12.54□□□□□ -0.4
DDX41-201ENST00000330503 HLA-DRB4X5D2U9 266 aa12.54□□□□□ -0.4
DDX41-201ENST00000330503 RBMY1BA6NDE4 496 aaKnown RBP12.53□□□□□ -0.4
DDX41-201ENST00000330503 RBMY1EA6NEQ0 496 aaKnown RBP12.53□□□□□ -0.4
DDX41-201ENST00000330503 M0R381 172 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 RBMY1DP0C7P1 496 aaKnown RBP12.53□□□□□ -0.4
DDX41-201ENST00000330503 PKIAP61925 76 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 TEX43Q6ZNM6 134 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 FA2HQ7L5A8 372 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 SMIM15Q7Z3B0 74 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 AP5S1Q9NUS5 200 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 TRAV25A0A0B4J276 109 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 TCF21O43680 179 aa12.53□□□□□ -0.4
DDX41-201ENST00000330503 SPAG8Q99932 426 aaPredicted RBP12.53□□□□□ -0.4
DDX41-201ENST00000330503 WNK1Q9H4A3 2382 aa12.52□□□□□ -0.4
DDX41-201ENST00000330503 FXYD7P58549 80 aa12.52□□□□□ -0.4
DDX41-201ENST00000330503 MUC4Q99102 2169 aa12.52□□□□□ -0.4
DDX41-201ENST00000330503 HIVEP1P15822 2718 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 OR4C46A6NHA9 309 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 NXPH4O95158 308 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 TNFRSF6BO95407 300 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 CD7P09564 240 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 FOSL1P15407 271 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 NSUN5P1Q3KNT7 163 aa12.52□□□□□ -0.41
DDX41-201ENST00000330503 CRXO43186 299 aaPredicted RBP12.51□□□□□ -0.41
DDX41-201ENST00000330503 LAMTOR2Q9Y2Q5 125 aa12.51□□□□□ -0.41
DDX41-201ENST00000330503 A0A096LNJ9 63 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 TRAV26-2A0A0B4J265 109 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 IGHV3-16A0A0C4DH30 117 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 LEPROTL1O95214 131 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 RBMY1A1P0DJD3 496 aaKnown RBP12.5□□□□□ -0.41
DDX41-201ENST00000330503 RBMY1CP0DJD4 496 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 RBMY1FQ15415 496 aaKnown RBP12.5□□□□□ -0.41
DDX41-201ENST00000330503 SPATA12Q7Z6I5 190 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 NRACQ8N912 160 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 IGHV1OR15-1A0A075B7D0 117 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 BTF3P20290 206 aaKnown RBP12.5□□□□□ -0.41
DDX41-201ENST00000330503 MDFICQ9P1T7 246 aa12.5□□□□□ -0.41
DDX41-201ENST00000330503 ODF3L2Q3SX64 289 aa12.49□□□□□ -0.41
DDX41-201ENST00000330503 Q8N1Y9 231 aa12.49□□□□□ -0.41
DDX41-201ENST00000330503 C14orf178Q8N769 122 aaPredicted RBP12.49□□□□□ -0.41
DDX41-201ENST00000330503 OR2K2Q8NGT1 345 aa12.49□□□□□ -0.41
DDX41-201ENST00000330503 NSD1Q96L73 2696 aaPredicted RBP12.49□□□□□ -0.41
DDX41-201ENST00000330503 C9orf85Q96MD7 179 aa12.49□□□□□ -0.41
DDX41-201ENST00000330503 MAP1LC3AQ9H492 121 aa12.49□□□□□ -0.41
DDX41-201ENST00000330503 FN1P02751 2386 aaKnown RBP12.48□□□□□ -0.41
DDX41-201ENST00000330503 LINC01546A6NGU7 62 aa12.48□□□□□ -0.41
DDX41-201ENST00000330503 DPH3P1Q9H4G8 78 aa12.48□□□□□ -0.41
DDX41-201ENST00000330503 KIF25-AS1Q9Y6Z4 181 aa12.48□□□□□ -0.41
DDX41-201ENST00000330503 TSTD3H0UI37 97 aa12.47□□□□□ -0.41
DDX41-201ENST00000330503 TMEM70Q9BUB7 260 aa12.47□□□□□ -0.41
DDX41-201ENST00000330503 IGLV2-18A0A075B6J9 118 aa12.47□□□□□ -0.41
DDX41-201ENST00000330503 PRSS47A8MTI9 375 aa12.47□□□□□ -0.41
DDX41-201ENST00000330503 MRAP2Q96G30 205 aa12.47□□□□□ -0.41
DDX41-201ENST00000330503 LINC00315P59091 139 aa12.46□□□□□ -0.41
DDX41-201ENST00000330503 DEFB125Q8N687 156 aa12.46□□□□□ -0.41
DDX41-201ENST00000330503 JPT2Q9H910 190 aa12.46□□□□□ -0.41
DDX41-201ENST00000330503 SYS1-DBNDD2H3BUS1 97 aa12.46□□□□□ -0.42
DDX41-201ENST00000330503 CRLF1O75462 422 aa12.46□□□□□ -0.42
DDX41-201ENST00000330503 NDUFA11Q86Y39 141 aa12.46□□□□□ -0.42
DDX41-201ENST00000330503 POM121L12Q8N7R1 296 aa12.46□□□□□ -0.42
DDX41-201ENST00000330503 ZNF747Q9BV97 191 aa12.46□□□□□ -0.42
DDX41-201ENST00000330503 KIR2DL5BA0A0G2JN68 375 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 KIR2DL5BA0A0G2JPC4 375 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 SAP30O75446 220 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 KIR2DL5AQ8N109 375 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 Q8N8P6 123 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 AP1S3Q96PC3 154 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 HSPB8Q9UJY1 196 aa12.45□□□□□ -0.42
DDX41-201ENST00000330503 DDTP30046 118 aa12.44□□□□□ -0.42
DDX41-201ENST00000330503 RASL10AQ92737 203 aa12.44□□□□□ -0.42
DDX41-201ENST00000330503 CLUHP3Q96NS8 147 aa12.44□□□□□ -0.42
DDX41-201ENST00000330503 NXT2Q9NPJ8 142 aaKnown RBP12.44□□□□□ -0.42
DDX41-201ENST00000330503 IGLV1-51P01701 117 aa12.44□□□□□ -0.42
DDX41-201ENST00000330503 VAMP8Q9BV40 100 aa12.44□□□□□ -0.42
DDX41-201ENST00000330503 ATOH7Q8N100 152 aa12.43□□□□□ -0.42
DDX41-201ENST00000330503 PAM16Q9Y3D7 125 aa12.43□□□□□ -0.42
DDX41-201ENST00000330503 NIPBLQ6KC79 2804 aaeCLIP12.43□□□□□ -0.42
DDX41-201ENST00000330503 PRM2P04554 102 aa12.43□□□□□ -0.42
DDX41-201ENST00000330503 MGPP08493 103 aa12.43□□□□□ -0.42
DDX41-201ENST00000330503 MAP1LC3CQ9BXW4 147 aa12.43□□□□□ -0.42
DDX41-201ENST00000330503 OR11H12B2RN74 326 aa12.42□□□□□ -0.42
DDX41-201ENST00000330503 HBDP02042 147 aa12.42□□□□□ -0.42
DDX41-201ENST00000330503 C20orf144Q9BQM9 153 aa12.42□□□□□ -0.42
DDX41-201ENST00000330503 C2CD3Q4AC94 2353 aa12.42□□□□□ -0.42
DDX41-201ENST00000330503 TRGV11A0A075B6L2 103 aa12.41□□□□□ -0.42
DDX41-201ENST00000330503 CBY3A6NI87 242 aa12.41□□□□□ -0.42
DDX41-201ENST00000330503 PET117Q6UWS5 81 aa12.41□□□□□ -0.42
DDX41-201ENST00000330503 RPL39LQ96EH5 51 aaKnown RBP12.41□□□□□ -0.42
DDX41-201ENST00000330503 MAJINQ3KP22 176 aa12.41□□□□□ -0.42
DDX41-201ENST00000330503 MCRIP2Q9BUT9 160 aaKnown RBP12.41□□□□□ -0.42
DDX41-201ENST00000330503 A0A087WWL8 130 aa12.4□□□□□ -0.42
DDX41-201ENST00000330503 FCER1GP30273 86 aa12.4□□□□□ -0.42
DDX41-201ENST00000330503 TRPT1Q86TN4 253 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms