RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TCL1AP56279 114 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 C5orf47Q569G3 176 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 FAM231DQ6ZW35 169 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 MCRIP2Q9BUT9 160 aaKnown RBP7.48□□□□□ -1.21
HMGB3-201ENST00000325307 INSL3P51460 131 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 ZNF138P52744 262 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 FER1L6-AS1Q8NA97 138 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 CT45A10P0DMU9 189 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 IGLL1P15814 213 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 OR2K2Q8NGT1 345 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 C8orf49Q96NF6 230 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 SIGMAR1Q99720 223 aa7.48□□□□□ -1.21
HMGB3-201ENST00000325307 ZNF256Q9Y2P7 627 aaPredicted RBP7.48□□□□□ -1.21
HMGB3-201ENST00000325307 GRIFINA4D1Z8 144 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 KNCNA6PVL3 124 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 SPINK4O60575 86 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 HNRNPA3P51991 378 aaKnown RBP7.47□□□□□ -1.21
HMGB3-201ENST00000325307 SMAGPQ0VAQ4 97 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 GDF5OSQ5U4N7 250 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 APRG1Q8IVJ8 170 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 PRR25Q96S07 402 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 MAP6D1Q9H9H5 199 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 F8WDY8 70 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 CRISP2P16562 243 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 TMEM136Q6ZRR5 245 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 C9orf47Q6ZRZ4 202 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 LINC00477Q96M19 166 aa7.47□□□□□ -1.21
HMGB3-201ENST00000325307 MRPL18Q9H0U6 180 aaKnown RBP7.47□□□□□ -1.21
HMGB3-201ENST00000325307 C19orf71A6NCJ1 209 aa7.46□□□□□ -1.21
HMGB3-201ENST00000325307 F2Z2F3 143 aa7.46□□□□□ -1.21
HMGB3-201ENST00000325307 Q6ZN92 141 aa7.46□□□□□ -1.21
HMGB3-201ENST00000325307 NEGR1Q7Z3B1 354 aa7.46□□□□□ -1.21
HMGB3-201ENST00000325307 MDFIQ99750 246 aa7.46□□□□□ -1.21
HMGB3-201ENST00000325307 GNB1LQ9BYB4 327 aa7.46□□□□□ -1.21
HMGB3-201ENST00000325307 TRBV6-1A0A0K0K1D8 114 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 VAMP3Q15836 100 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 FOXI2Q6ZQN5 318 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 KCNS1Q96KK3 526 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 ZNF492Q9P255 531 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 A0A0J9YX75 114 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 NPIPB6E9PJ23 425 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 PET117Q6UWS5 81 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 ZC2HC1AQ96GY0 325 aa7.46□□□□□ -1.22
HMGB3-201ENST00000325307 SNURFLB1AK76 121 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 ODF3L2Q3SX64 289 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 SMIM20Q8N5G0 67 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 WFDC9Q8NEX5 89 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 GTSF1LQ9H1H1 148 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 DUSP14O95147 198 aaKnown RBP7.45□□□□□ -1.22
HMGB3-201ENST00000325307 CD7P09564 240 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 TAX1BP3O14907 124 aa7.45□□□□□ -1.22
HMGB3-201ENST00000325307 MRPL54Q6P161 138 aaKnown RBP7.44□□□□□ -1.22
HMGB3-201ENST00000325307 NUP35Q8NFH5 326 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 GTSF1Q8WW33 167 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 P01737 135 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 C3orf79P0CE67 100 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 CMC4P56277 68 aaPredicted RBP7.44□□□□□ -1.22
HMGB3-201ENST00000325307 PMCHL1Q16048 86 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 GTSCR1Q86UQ5 136 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 FAM162BQ5T6X4 162 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 STHQ8IWL8 128 aa7.44□□□□□ -1.22
HMGB3-201ENST00000325307 AGRNO00468 2067 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 SMIM17P0DL12 118 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 BEAN1Q3B7T3 259 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 ZNF324O75467 553 aaPredicted RBP7.43□□□□□ -1.22
HMGB3-201ENST00000325307 MT-ND6P03923 174 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 HLA-DRB4P13762 266 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 RNASE4P34096 147 aaKnown RBP7.43□□□□□ -1.22
HMGB3-201ENST00000325307 PRR31Q5SQ13 230 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 DEFB125Q8N687 156 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 TSKUQ8WUA8 353 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 WFDC10AQ9H1F0 79 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 LENEPQ9Y5L5 61 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 HLA-DRB4X5D2U9 266 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 TRRAPQ9Y4A5 3859 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 A0A1B0GXF2 115 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 HIGD1CA8MV81 97 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 H3BMM0 161 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 M0R2Z0 102 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 SH2D1AO60880 128 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 FXYD7P58549 80 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 OXLD1Q5BKU9 147 aa7.43□□□□□ -1.22
HMGB3-201ENST00000325307 CRIP1P50238 77 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 ZNF80P51504 273 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-201ENST00000325307 SPINK13Q1W4C9 94 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 KIAA1644Q3SXP7 199 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 RPP21Q9H633 154 aaKnown RBP7.42□□□□□ -1.22
HMGB3-201ENST00000325307 TRAV9-2A0A087WT02 112 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 CRXO43186 299 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-201ENST00000325307 LEPP41159 167 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 HINT1P49773 126 aaPredicted RBP7.42□□□□□ -1.22
HMGB3-201ENST00000325307 UFSP1Q6NVU6 142 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 RCHY1Q96PM5 261 aa7.42□□□□□ -1.22
HMGB3-201ENST00000325307 FABP5P3A8MUU1 101 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 ORM1P02763 201 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 KIR3DS1Q14943 382 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 ZFAND2AQ8N6M9 145 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 NAT8BQ9UHF3 227 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 TRAV12-2A0A075B6T6 113 aa7.41□□□□□ -1.22
HMGB3-201ENST00000325307 TMSB15BA0A087X1C1 80 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms