RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 LAMTOR2Q9Y2Q5 125 aa13.65□□□□□ -0.22
CCDC43-201ENST00000315286 HIVEP2P31629 2446 aa13.65□□□□□ -0.22
CCDC43-201ENST00000315286 DUSP14O95147 198 aaKnown RBP13.65□□□□□ -0.22
CCDC43-201ENST00000315286 SCGB2A2Q13296 93 aa13.65□□□□□ -0.22
CCDC43-201ENST00000315286 NDUFAF3Q9BU61 184 aa13.65□□□□□ -0.22
CCDC43-201ENST00000315286 C16orf95Q9H693 158 aa13.65□□□□□ -0.22
CCDC43-201ENST00000315286 TRAV26-2A0A0B4J265 109 aa13.64□□□□□ -0.23
CCDC43-201ENST00000315286 FXYD7P58549 80 aa13.64□□□□□ -0.23
CCDC43-201ENST00000315286 CTAG1AP78358 180 aa13.64□□□□□ -0.23
CCDC43-201ENST00000315286 SPINK13Q1W4C9 94 aa13.64□□□□□ -0.23
CCDC43-201ENST00000315286 CDKN1BP46527 198 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 DEFB131AP59861 70 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 DYNLRB2Q8TF09 96 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 ZNF418Q8TF45 676 aaPredicted RBP13.63□□□□□ -0.23
CCDC43-201ENST00000315286 CITED2Q99967 270 aaPredicted RBP13.63□□□□□ -0.23
CCDC43-201ENST00000315286 ZNF747Q9BV97 191 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 MAP1LC3CQ9BXW4 147 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 TMEM160Q9NX00 188 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 DEFB114Q30KQ6 69 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 MAJINQ3KP22 176 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 SPATA45Q537H7 98 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 AMTNQ6UX39 209 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 OR2K2Q8NGT1 345 aa13.63□□□□□ -0.23
CCDC43-201ENST00000315286 KNCNA6PVL3 124 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 HILS1P60008 231 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 NRACQ8N912 160 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 TRAV2A0A0B4J234 112 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 CCL24O00175 119 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 CD7P09564 240 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 TSPOP30536 169 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 FHL3Q13643 280 aa13.62□□□□□ -0.23
CCDC43-201ENST00000315286 C14orf178Q8N769 122 aaPredicted RBP13.61□□□□□ -0.23
CCDC43-201ENST00000315286 MCRIP2Q9BUT9 160 aaKnown RBP13.61□□□□□ -0.23
CCDC43-201ENST00000315286 LY6G6DO95868 133 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 ZNF124Q15973 351 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 CD300EQ496F6 205 aaPredicted RBP13.6□□□□□ -0.23
CCDC43-201ENST00000315286 OTOGQ6ZRI0 2925 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 LINC01546A6NGU7 62 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 H0Y8G0 127 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 HBDP02042 147 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 PET117Q6UWS5 81 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 ZNF705AQ6ZN79 300 aaPredicted RBP13.6□□□□□ -0.23
CCDC43-201ENST00000315286 MIEN1Q9BRT3 115 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 DPH3P1Q9H4G8 78 aa13.6□□□□□ -0.23
CCDC43-201ENST00000315286 NXT2Q9NPJ8 142 aaKnown RBP13.6□□□□□ -0.23
CCDC43-201ENST00000315286 OR4C46A6NHA9 309 aa13.59□□□□□ -0.23
CCDC43-201ENST00000315286 MRAP2Q96G30 205 aa13.59□□□□□ -0.23
CCDC43-201ENST00000315286 TSSC4Q9Y5U2 329 aaPredicted RBP13.59□□□□□ -0.23
CCDC43-201ENST00000315286 IGLV2-18A0A075B6J9 118 aa13.59□□□□□ -0.23
CCDC43-201ENST00000315286 TRAV9-2A0A087WT02 112 aa13.59□□□□□ -0.23
CCDC43-201ENST00000315286 NXPH4O95158 308 aa13.59□□□□□ -0.23
CCDC43-201ENST00000315286 C20orf202A1L168 122 aa13.58□□□□□ -0.24
CCDC43-201ENST00000315286 H3BMM0 161 aa13.58□□□□□ -0.24
CCDC43-201ENST00000315286 HLA-DRB4P13762 266 aa13.58□□□□□ -0.24
CCDC43-201ENST00000315286 Q8N8P6 123 aa13.58□□□□□ -0.24
CCDC43-201ENST00000315286 HLA-DRB4X5D2U9 266 aa13.58□□□□□ -0.24
CCDC43-201ENST00000315286 IGHV3-16A0A0C4DH30 117 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 PRSS47A8MTI9 375 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 MAP6D1Q9H9H5 199 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 MDFICQ9P1T7 246 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 SETXQ7Z333 2677 aaKnown RBP13.57□□□□□ -0.24
CCDC43-201ENST00000315286 IGHV1OR15-1A0A075B7D0 117 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 Q8N1Y9 231 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 DEFB125Q8N687 156 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 AP1S3Q96PC3 154 aa13.57□□□□□ -0.24
CCDC43-201ENST00000315286 RBMY1BA6NDE4 496 aaKnown RBP13.56□□□□□ -0.24
CCDC43-201ENST00000315286 RBMY1EA6NEQ0 496 aaKnown RBP13.56□□□□□ -0.24
CCDC43-201ENST00000315286 A8MTW9 85 aa13.56□□□□□ -0.24
CCDC43-201ENST00000315286 RBMY1DP0C7P1 496 aaKnown RBP13.56□□□□□ -0.24
CCDC43-201ENST00000315286 PMCHL2Q9BQD1 86 aa13.56□□□□□ -0.24
CCDC43-201ENST00000315286 ZNF256Q9Y2P7 627 aaPredicted RBP13.56□□□□□ -0.24
CCDC43-201ENST00000315286 MGPP08493 103 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 IGLL1P15814 213 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 LINC01545Q5VT33 79 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 C9orf85Q96MD7 179 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 RBMY1A1P0DJD3 496 aaKnown RBP13.55□□□□□ -0.24
CCDC43-201ENST00000315286 RBMY1CP0DJD4 496 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 IGLC3P0DOY3 106 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 RBMY1FQ15415 496 aaKnown RBP13.55□□□□□ -0.24
CCDC43-201ENST00000315286 RASL10AQ92737 203 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 SPAG8Q99932 426 aaPredicted RBP13.55□□□□□ -0.24
CCDC43-201ENST00000315286 JPT2Q9H910 190 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 KIF25-AS1Q9Y6Z4 181 aa13.55□□□□□ -0.24
CCDC43-201ENST00000315286 FCER1GP30273 86 aa13.54□□□□□ -0.24
CCDC43-201ENST00000315286 LINC00315P59091 139 aa13.54□□□□□ -0.24
CCDC43-201ENST00000315286 NDUFA7O95182 113 aa13.54□□□□□ -0.24
CCDC43-201ENST00000315286 RPL39LQ96EH5 51 aaKnown RBP13.53□□□□□ -0.24
CCDC43-201ENST00000315286 TRAV25A0A0B4J276 109 aa13.52□□□□□ -0.24
CCDC43-201ENST00000315286 hDV102S1A0JD36 115 aa13.52□□□□□ -0.24
CCDC43-201ENST00000315286 TCAPO15273 167 aa13.52□□□□□ -0.24
CCDC43-201ENST00000315286 PROK1P58294 105 aa13.52□□□□□ -0.24
CCDC43-201ENST00000315286 POM121L12Q8N7R1 296 aa13.52□□□□□ -0.24
CCDC43-201ENST00000315286 IFI27L1Q96BM0 104 aa13.52□□□□□ -0.24
CCDC43-201ENST00000315286 NIPBLQ6KC79 2804 aaeCLIP13.52□□□□□ -0.24
CCDC43-201ENST00000315286 TMEM158Q8WZ71 300 aa13.52□□□□□ -0.25
CCDC43-201ENST00000315286 UQCR10Q9UDW1 63 aa13.52□□□□□ -0.25
CCDC43-201ENST00000315286 SMIM17P0DL12 118 aa13.51□□□□□ -0.25
CCDC43-201ENST00000315286 C18orf15Q96N68 181 aa13.51□□□□□ -0.25
CCDC43-201ENST00000315286 JMJD8Q96S16 334 aa13.51□□□□□ -0.25
CCDC43-201ENST00000315286 SMIM2Q9BVW6 85 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms