RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 CXCL1P09341 107 aa7.72□□□□□ -1.17
CSPG4P1Y-201ENST00000306641 SFTA3P0C7M3 94 aa7.72□□□□□ -1.17
CSPG4P1Y-201ENST00000306641 ARMS2P0C7Q2 107 aa7.72□□□□□ -1.17
CSPG4P1Y-201ENST00000306641 RPL19P84098 196 aaKnown RBP7.72□□□□□ -1.17
CSPG4P1Y-201ENST00000306641 DNLZQ5SXM8 178 aa7.72□□□□□ -1.17
CSPG4P1Y-201ENST00000306641 PRO0255Q9UI72 69 aa7.72□□□□□ -1.17
CSPG4P1Y-201ENST00000306641 TRBV20OR9-2A0A075B6H5 130 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 PGPEP1LA6NFU8 196 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 H3BNG1 76 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 PAX4O43316 350 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 CIDEAO60543 219 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 IGLV2-8P01709 118 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 P01737 135 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 MED14OSP0DP75 135 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RPS20P60866 119 aaKnown RBP7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 PEA15Q15121 130 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 PIK3CD-AS1Q5SR53 167 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ZFP82Q8N141 532 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 PTH2Q96A98 100 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ZNF479Q96JC4 524 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SMIM7Q9BQ49 75 aa7.71□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ZNF727A8MUV8 499 aa7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 A8MWV9 139 aa7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 M0R381 172 aa7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SRP19P09132 144 aaKnown RBP7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 OR2D3Q8NGH3 330 aa7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 HHLA3Q9XRX5 114 aa7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ICOSQ9Y6W8 199 aa7.7□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 C19orf71A6NCJ1 209 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RS1O15537 224 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 CRYBA4P53673 196 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 CCL18P55774 89 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 FHL2Q14192 279 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SPANXN1Q5VSR9 72 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 CFAP126Q5VTH2 177 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 TPPP3Q9BW30 176 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SMDT1Q9H4I9 107 aa7.69□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 IGHV3-73A0A0B4J1V6 119 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RHODO00212 210 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 FAM74A3Q4VXF1 159 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 DMRTA1Q5VZB9 504 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 POM121L12Q8N7R1 296 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 OCC1Q8TAD7 63 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 PRADC1Q9BSG0 188 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SCRT2Q9NQ03 307 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 LY96Q9Y6Y9 160 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 LYSTQ99698 3801 aa7.68□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 K7EN84 100 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SNAI2O43623 268 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 OR5AL1P0C617 328 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 GATA1P15976 413 aaPredicted RBP7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SRIP30626 198 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RHOHQ15669 191 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 MRPL23Q16540 153 aaKnown RBP7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RNF212Q495C1 297 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 FAM74A4Q5TZK3 123 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 FER1L6-AS1Q8NA97 138 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 NUDT10Q8NFP7 164 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 NUDT11Q96G61 164 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 VSIG2Q96IQ7 327 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RNASE7Q9H1E1 156 aaKnown RBP7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 RPP21Q9H633 154 aaKnown RBP7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 TENM2Q9NT68 2774 aa7.67□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 A0A096LPF7 62 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 A0A1W2PPQ1 181 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 GATCO43716 136 aaKnown RBP7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 GZMBP10144 247 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 GYPEP15421 78 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 FAM3BP58499 235 aaPredicted RBP7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ERVFC1-1P60608 527 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 CLLU1Q5K131 121 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ZFP2Q6ZN57 461 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 OR10AG1Q8NH19 301 aa7.66□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 TRBV6-4A0A1B0GX49 114 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 F2Z2F3 143 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 K7EQD1 137 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SMIM17P0DL12 118 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SSTP61278 116 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 CACNG7P62955 275 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SOHLH1Q5JUK2 328 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 FAM231DQ6ZW35 169 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 LINC01551Q86U37 167 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SFRP2Q96HF1 295 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 AP1S3Q96PC3 154 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 SSBP4Q9BWG4 385 aaPredicted RBP7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 JPT2Q9H910 190 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 NAT8Q9UHE5 227 aa7.65□□□□□ -1.18
CSPG4P1Y-201ENST00000306641 ALMS1Q8TCU4 4167 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 A0A087WWL8 130 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 MUC21A0A0G2JKD1 596 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 MUC21A0A140T8X8 626 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 NXPH4O95158 308 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 IGLC6P0CF74 106 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 SRSF3P84103 164 aaKnown RBP7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 ADIRFQ15847 76 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 ZNF56Q15929 161 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 TMEM241Q24JQ0 296 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 NEGR1Q7Z3B1 354 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 SH2D6Q7Z4S9 175 aa7.64□□□□□ -1.19
CSPG4P1Y-201ENST00000306641 ZNF575Q86XF7 245 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms