RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FOXC2Q99958 501 aa15.05■□□□□ -0
VPS53-201ENST00000291074 MGPP08493 103 aa15.04■□□□□ -0
VPS53-201ENST00000291074 C12orf54Q6X4T0 127 aa15.04■□□□□ -0
VPS53-201ENST00000291074 MRAP2Q96G30 205 aa15.04■□□□□ -0
VPS53-201ENST00000291074 TLN2Q9Y4G6 2542 aa15.04■□□□□ -0
VPS53-201ENST00000291074 PRSS47A8MTI9 375 aa15.04■□□□□ -0
VPS53-201ENST00000291074 ID1P41134 155 aa15.04■□□□□ -0
VPS53-201ENST00000291074 NMUP48645 174 aa15.04■□□□□ -0
VPS53-201ENST00000291074 SYNJ2BPP57105 145 aa15.04■□□□□ -0
VPS53-201ENST00000291074 PCP2Q8IVA1 136 aa15.04■□□□□ -0
VPS53-201ENST00000291074 OR1N2Q8NGR9 330 aa15.04■□□□□ -0
VPS53-201ENST00000291074 KLLNB2CW77 178 aa15.03■□□□□ -0
VPS53-201ENST00000291074 FSHBP01225 129 aa15.03■□□□□ -0
VPS53-201ENST00000291074 IGKV3-20P01619 116 aa15.03■□□□□ -0
VPS53-201ENST00000291074 PSMG4Q5JS54 123 aa15.03■□□□□ -0
VPS53-201ENST00000291074 RASL10AQ92737 203 aa15.03■□□□□ -0
VPS53-201ENST00000291074 VPS25Q9BRG1 176 aa15.03■□□□□ -0
VPS53-201ENST00000291074 HOXA3O43365 443 aaPredicted RBP15.03■□□□□ -0
VPS53-201ENST00000291074 VAMP3Q15836 100 aa15.03■□□□□ -0
VPS53-201ENST00000291074 DEFB125Q8N687 156 aa15.03■□□□□ -0
VPS53-201ENST00000291074 SMIM2Q9BVW6 85 aa15.03■□□□□ -0
VPS53-201ENST00000291074 DPH3P1Q9H4G8 78 aa15.03■□□□□ -0
VPS53-201ENST00000291074 ZNF702PQ9H963 129 aa15.03■□□□□ -0
VPS53-201ENST00000291074 IGHV4OR15-8A0A075B7B6 117 aa15.02■□□□□ -0
VPS53-201ENST00000291074 A0A087WW49 117 aa15.02■□□□□ -0
VPS53-201ENST00000291074 Q6YL49 198 aa15.02■□□□□ -0
VPS53-201ENST00000291074 BOD1L2Q8IYS8 172 aa15.02■□□□□ -0
VPS53-201ENST00000291074 MYO9AB2RTY4 2548 aa15.02□□□□□ -0.01
VPS53-201ENST00000291074 TRAV12-3A0A0B4J271 114 aa15.01□□□□□ -0.01
VPS53-201ENST00000291074 TRBV7-9A0A0J9YWB2 115 aa15.01□□□□□ -0.01
VPS53-201ENST00000291074 TAX1BP3O14907 124 aa15.01□□□□□ -0.01
VPS53-201ENST00000291074 Q5PR19 223 aa15.01□□□□□ -0.01
VPS53-201ENST00000291074 APCP25054 2843 aa15□□□□□ -0.01
VPS53-201ENST00000291074 C7orf71A4D174 169 aa15□□□□□ -0.01
VPS53-201ENST00000291074 ZNF469Q96JG9 3925 aaPredicted RBP15□□□□□ -0.01
VPS53-201ENST00000291074 IGKV2D-26A0A0A0MRZ7 120 aa15□□□□□ -0.01
VPS53-201ENST00000291074 TMEM89A2RUT3 159 aa15□□□□□ -0.01
VPS53-201ENST00000291074 MED14OSP0DP75 135 aa15□□□□□ -0.01
VPS53-201ENST00000291074 ZMAT4Q9H898 229 aa15□□□□□ -0.01
VPS53-201ENST00000291074 HHLA3Q9XRX5 114 aa15□□□□□ -0.01
VPS53-201ENST00000291074 PRRC2AP48634 2157 aaKnown RBP15□□□□□ -0.01
VPS53-201ENST00000291074 LGALS1P09382 135 aaKnown RBP15□□□□□ -0.01
VPS53-201ENST00000291074 SUMO2P61956 95 aaKnown RBP15□□□□□ -0.01
VPS53-201ENST00000291074 TTTY13Q9BZ97 58 aa15□□□□□ -0.01
VPS53-201ENST00000291074 TRAV12-2A0A075B6T6 113 aa14.99□□□□□ -0.01
VPS53-201ENST00000291074 FAM159AQ6UWV7 190 aa14.99□□□□□ -0.01
VPS53-201ENST00000291074 JPT2Q9H910 190 aa14.99□□□□□ -0.01
VPS53-201ENST00000291074 AP1S3Q96PC3 154 aa14.99□□□□□ -0.01
VPS53-201ENST00000291074 IGKCP01834 107 aa14.98□□□□□ -0.01
VPS53-201ENST00000291074 HOXD3P31249 432 aaPredicted RBP14.98□□□□□ -0.01
VPS53-201ENST00000291074 DEFB113Q30KQ7 82 aa14.98□□□□□ -0.01
VPS53-201ENST00000291074 C18orf65Q6ZTR6 163 aa14.98□□□□□ -0.01
VPS53-201ENST00000291074 MYOZ3Q8TDC0 251 aa14.98□□□□□ -0.01
VPS53-201ENST00000291074 ATP5LO75964 103 aa14.98□□□□□ -0.01
VPS53-201ENST00000291074 TMEM97Q5BJF2 176 aa14.98□□□□□ -0.01
VPS53-201ENST00000291074 MRPL35Q9NZE8 188 aaKnown RBP14.98□□□□□ -0.01
VPS53-201ENST00000291074 K7EQG2 157 aa14.97□□□□□ -0.01
VPS53-201ENST00000291074 CD7P09564 240 aa14.97□□□□□ -0.01
VPS53-201ENST00000291074 DEFB136Q30KP8 78 aa14.97□□□□□ -0.01
VPS53-201ENST00000291074 GTSCR1Q86UQ5 136 aa14.97□□□□□ -0.01
VPS53-201ENST00000291074 Q96MF0 132 aa14.97□□□□□ -0.01
VPS53-201ENST00000291074 A0A0J9YX75 114 aa14.96□□□□□ -0.01
VPS53-201ENST00000291074 CST9LQ9H4G1 147 aa14.96□□□□□ -0.01
VPS53-201ENST00000291074 TMEM160Q9NX00 188 aa14.96□□□□□ -0.01
VPS53-201ENST00000291074 DPM2O94777 84 aa14.96□□□□□ -0.02
VPS53-201ENST00000291074 ELANEP08246 267 aa14.96□□□□□ -0.02
VPS53-201ENST00000291074 SAMD13Q5VXD3 122 aa14.96□□□□□ -0.02
VPS53-201ENST00000291074 NEGR1Q7Z3B1 354 aa14.96□□□□□ -0.02
VPS53-201ENST00000291074 NXPH4O95158 308 aa14.95□□□□□ -0.02
VPS53-201ENST00000291074 SNRPD3P62318 126 aaKnown RBP14.95□□□□□ -0.02
VPS53-201ENST00000291074 DEFB104AQ8WTQ1 72 aa14.95□□□□□ -0.02
VPS53-201ENST00000291074 SONP18583 2426 aaKnown RBP14.95□□□□□ -0.02
VPS53-201ENST00000291074 ZC2HC1BQ5TFG8 222 aa14.95□□□□□ -0.02
VPS53-201ENST00000291074 KIF25-AS1Q9Y6Z4 181 aa14.95□□□□□ -0.02
VPS53-201ENST00000291074 NBPF19A0A087WUL8 3843 aa14.95□□□□□ -0.02
VPS53-201ENST00000291074 ITPR3Q14573 2671 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 LINC00315P59091 139 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 SPINK13Q1W4C9 94 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 OCIAD2Q56VL3 154 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 HIST2H2BDQ6DRA6 164 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 UBE2E2Q96LR5 201 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 C20orf78Q9BR46 151 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 A0A087WWL8 130 aa14.94□□□□□ -0.02
VPS53-201ENST00000291074 OR9G4Q8NGQ1 327 aa14.93□□□□□ -0.02
VPS53-201ENST00000291074 SLURP1P55000 103 aa14.93□□□□□ -0.02
VPS53-201ENST00000291074 ADAMTSL5Q6ZMM2 481 aa14.93□□□□□ -0.02
VPS53-201ENST00000291074 MDFICQ9P1T7 246 aa14.92□□□□□ -0.02
VPS53-201ENST00000291074 A0A087WX48 190 aa14.92□□□□□ -0.02
VPS53-201ENST00000291074 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.92□□□□□ -0.02
VPS53-201ENST00000291074 LGALS9O00182 355 aa14.92□□□□□ -0.02
VPS53-201ENST00000291074 ORMDL2Q53FV1 153 aa14.92□□□□□ -0.02
VPS53-201ENST00000291074 CSTL1Q9H114 145 aa14.92□□□□□ -0.02
VPS53-201ENST00000291074 AMMECR1LQ6DCA0 310 aa14.91□□□□□ -0.02
VPS53-201ENST00000291074 SCGB3A1Q96QR1 104 aa14.91□□□□□ -0.02
VPS53-201ENST00000291074 DUX3Q96PT4 197 aa14.91□□□□□ -0.02
VPS53-201ENST00000291074 TCTEX1D4Q5JR98 221 aa14.9□□□□□ -0.02
VPS53-201ENST00000291074 KRTAP1-3Q8IUG1 177 aa14.9□□□□□ -0.02
VPS53-201ENST00000291074 TOMM6Q96B49 74 aa14.9□□□□□ -0.02
VPS53-201ENST00000291074 HSD52Q0P140 79 aa14.9□□□□□ -0.02
VPS53-201ENST00000291074 SUMO4Q6EEV6 95 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 205 ms