RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 OR8A1Q8NGG7 326 aa9.61□□□□□ -0.87
HIF3A-201ENST00000244302 HSPB8Q9UJY1 196 aa9.61□□□□□ -0.87
HIF3A-201ENST00000244302 WFDC10AQ9H1F0 79 aa9.6□□□□□ -0.87
HIF3A-201ENST00000244302 CLEC5AQ9NY25 188 aa9.6□□□□□ -0.87
HIF3A-201ENST00000244302 CBY1Q9Y3M2 126 aa9.6□□□□□ -0.87
HIF3A-201ENST00000244302 A0A1B0GUT8 65 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 BMI1P35226 326 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 MAJINQ3KP22 176 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 MAP1LC3CQ9BXW4 147 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 COX11Q9Y6N1 276 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 HSBP1L1C9JCN9 74 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 CD7P09564 240 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 ZNF575Q86XF7 245 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 NBEAL2Q6ZNJ1 2754 aa9.59□□□□□ -0.87
HIF3A-201ENST00000244302 SERTM2A0A1B0GWG4 89 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 IGLV1-51P01701 117 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 ID1P41134 155 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 HINT1P49773 126 aaPredicted RBP9.58□□□□□ -0.88
HIF3A-201ENST00000244302 FXYD7P58549 80 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 C9orf47Q6ZRZ4 202 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 TMSB15BA0A087X1C1 80 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 ZNF138P52744 262 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 ODF3L2Q3SX64 289 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 TMEM78Q5T7P6 136 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 SPATA12Q7Z6I5 190 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 C3orf56Q8N813 242 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 MRPL53Q96EL3 112 aaKnown RBP9.58□□□□□ -0.88
HIF3A-201ENST00000244302 C11orf21Q9P2W6 132 aa9.58□□□□□ -0.88
HIF3A-201ENST00000244302 SNRPD3P62318 126 aaKnown RBP9.57□□□□□ -0.88
HIF3A-201ENST00000244302 ARL6IP6Q8N6S5 226 aa9.57□□□□□ -0.88
HIF3A-201ENST00000244302 OR10J6PQ8NGY7 276 aa9.57□□□□□ -0.88
HIF3A-201ENST00000244302 MDFIQ99750 246 aa9.57□□□□□ -0.88
HIF3A-201ENST00000244302 MAP6D1Q9H9H5 199 aa9.57□□□□□ -0.88
HIF3A-201ENST00000244302 SIGLEC8Q9NYZ4 499 aa9.57□□□□□ -0.88
HIF3A-201ENST00000244302 TRAV12-2A0A075B6T6 113 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 A0A0J9YX75 114 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 RBAKDNA6NC62 111 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 UBE2V1Q13404 147 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 SLC25A34Q6PIV7 304 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 NOTCH1P46531 2555 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 RBMY1BA6NDE4 496 aaKnown RBP9.56□□□□□ -0.88
HIF3A-201ENST00000244302 RBMY1EA6NEQ0 496 aaKnown RBP9.56□□□□□ -0.88
HIF3A-201ENST00000244302 FBLL1A6NHQ2 334 aaKnown RBP9.56□□□□□ -0.88
HIF3A-201ENST00000244302 SH2D1AO60880 128 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 RBMY1DP0C7P1 496 aaKnown RBP9.56□□□□□ -0.88
HIF3A-201ENST00000244302 PTTG1IPP53801 180 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 ZFAND2AQ8N6M9 145 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 PMCHL2Q9BQD1 86 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 ZNF747Q9BV97 191 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 DNHD1Q96M86 4753 aa9.56□□□□□ -0.88
HIF3A-201ENST00000244302 SPRY2O43597 315 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 C12orf54Q6X4T0 127 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 ZNF493Q6ZR52 646 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 MUC21A0A0G2JKD1 596 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 MUC21A0A140T8X8 626 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 PRM2P04554 102 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 MUC21Q5SSG8 566 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 LINC01545Q5VT33 79 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 SPAG8Q99932 426 aaPredicted RBP9.55□□□□□ -0.88
HIF3A-201ENST00000244302 AP5S1Q9NUS5 200 aa9.55□□□□□ -0.88
HIF3A-201ENST00000244302 RNASE4P34096 147 aaKnown RBP9.54□□□□□ -0.88
HIF3A-201ENST00000244302 SPINK13Q1W4C9 94 aa9.54□□□□□ -0.88
HIF3A-201ENST00000244302 SAPCD1Q5SSQ6 148 aa9.54□□□□□ -0.88
HIF3A-201ENST00000244302 COX8CQ7Z4L0 72 aa9.54□□□□□ -0.88
HIF3A-201ENST00000244302 FAM19A4Q96LR4 140 aa9.54□□□□□ -0.88
HIF3A-201ENST00000244302 LINC00477Q96M19 166 aa9.54□□□□□ -0.88
HIF3A-201ENST00000244302 SCRT2Q9NQ03 307 aa9.54□□□□□ -0.88
HIF3A-201ENST00000244302 ARMS2P0C7Q2 107 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 LINC00173Q6ZV60 143 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 FA2HQ7L5A8 372 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 OR10AG1Q8NH19 301 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 H3BMM0 161 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 RPS20P60866 119 aaKnown RBP9.53□□□□□ -0.88
HIF3A-201ENST00000244302 OXLD1Q5BKU9 147 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 AMTNQ6UX39 209 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 C19orf73Q9NVV2 129 aa9.53□□□□□ -0.88
HIF3A-201ENST00000244302 IGKV3D-20A0A0C4DH25 116 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 hDV102S1A0JD36 115 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 CCL25O15444 150 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 TMEM158Q8WZ71 300 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 NBEAL1Q6ZS30 2694 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 TRAV25A0A0B4J276 109 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 K7EP13 123 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 ORM1P02763 201 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 FOXI2Q6ZQN5 318 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 U3KQK5 164 aa9.52□□□□□ -0.89
HIF3A-201ENST00000244302 DNAH3Q8TD57 4116 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 TRAV12-3A0A0B4J271 114 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 RBMY1A1P0DJD3 496 aaKnown RBP9.51□□□□□ -0.89
HIF3A-201ENST00000244302 RBMY1CP0DJD4 496 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 RBMY1FQ15415 496 aaKnown RBP9.51□□□□□ -0.89
HIF3A-201ENST00000244302 BEAN1Q3B7T3 259 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 BVES-AS1Q5T3Y7 98 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 WFDC9Q8NEX5 89 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 PRSS3P2Q8NHM4 247 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 TPPP3Q9BW30 176 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 MGAM2Q2M2H8 2515 aa9.51□□□□□ -0.89
HIF3A-201ENST00000244302 MPV17L2Q567V2 206 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 DEFB125Q8N687 156 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 TRAV2A0A0B4J234 112 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms