RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PHLDA3Q9Y5J5 127 aa6.52□□□□□ -1.37
VPS4B-201ENST00000238497 TRAV8-2A0A0B4J237 113 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 C20orf202A1L168 122 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 CT83Q5H943 113 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 SMIM12Q96EX1 92 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 URB1-AS1Q96HZ7 61 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 RAX2Q96IS3 184 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 SNHG12Q9BXW3 62 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 DAZ1Q9NQZ3 744 aaKnown RBP6.51□□□□□ -1.37
VPS4B-201ENST00000238497 RASL11AQ6T310 242 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 C14orf178Q8N769 122 aaPredicted RBP6.51□□□□□ -1.37
VPS4B-201ENST00000238497 GFRA4Q9GZZ7 299 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 IGHV3OR16-12A0A075B7B8 117 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 IGKV3D-20A0A0C4DH25 116 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 FAM104BQ5XKR9 115 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 Q6ZVH6 145 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 SPATA12Q7Z6I5 190 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 LINC00482Q8N8I6 264 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 LINC00477Q96M19 166 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 SIGLEC8Q9NYZ4 499 aa6.51□□□□□ -1.37
VPS4B-201ENST00000238497 CMYA5Q8N3K9 4069 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 PRR9Q5T870 116 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 OR1N2Q8NGR9 330 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 USMG5Q96IX5 58 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 NPIPB6E9PJ23 425 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 WFDC9Q8NEX5 89 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 NDUFA4O00483 81 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 PRM2P04554 102 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 CD7P09564 240 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 SLURP1P55000 103 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 SPINK13Q1W4C9 94 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 NEGR1Q7Z3B1 354 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 KLK9Q9UKQ9 250 aa6.5□□□□□ -1.37
VPS4B-201ENST00000238497 TMEM238LA0A1B0GVL6 79 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 SYS1-DBNDD2H3BUS1 97 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 ZNF25P17030 456 aaPredicted RBP6.49□□□□□ -1.37
VPS4B-201ENST00000238497 CACNG7P62955 275 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 ANXA2RQ3ZCQ2 193 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 STPG4Q8N801 248 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 MIEN1Q9BRT3 115 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 A0A087WWL8 130 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 IGHV7-4-1A0A0J9YVY3 117 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 PSMB8P28062 276 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 NMUP48645 174 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 TMEM191AQ9H0A3 160 aa6.49□□□□□ -1.37
VPS4B-201ENST00000238497 PRKDCP78527 4128 aaKnown RBP6.49□□□□□ -1.37
VPS4B-201ENST00000238497 IGHV4OR15-8A0A075B7B6 117 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 A0A087WW49 117 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 FAM231BA6NCW3 169 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 SAP30O75446 220 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 LEPP41159 167 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 MAP1LC3AQ9H492 121 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 HSPB8Q9UJY1 196 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 IGHV3-73A0A0B4J1V6 119 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 RPS20P60866 119 aaKnown RBP6.48□□□□□ -1.37
VPS4B-201ENST00000238497 Q6AWC8 147 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 FAM159AQ6UWV7 190 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 TEX43Q6ZNM6 134 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 UBE2E2Q96LR5 201 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 JPT2Q9H910 190 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 SMPXQ9UHP9 88 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 FBLL1A6NHQ2 334 aaKnown RBP6.48□□□□□ -1.37
VPS4B-201ENST00000238497 C2orf70A6NJV1 201 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 C4orf3Q8WVX3 66 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 TMEM190Q8WZ59 177 aa6.48□□□□□ -1.37
VPS4B-201ENST00000238497 KNCNA6PVL3 124 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 TNFRSF6BO95407 300 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 SMIM17P0DL12 118 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 ID1P41134 155 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 UQCR10Q9UDW1 63 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 TRAV9-2A0A087WT02 112 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 C7orf71A4D174 169 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 ESDP10768 282 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 KRTAP10-11P60412 298 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 KLF5Q13887 457 aaPredicted RBP6.47□□□□□ -1.37
VPS4B-201ENST00000238497 OVOL1O14753 267 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 ASIPP42127 132 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 C9orf66Q5T8R8 295 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 Q8N976 141 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 DYNLRB2Q8TF09 96 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 CHCHD1Q96BP2 118 aaKnown RBP6.47□□□□□ -1.37
VPS4B-201ENST00000238497 MS4A6AQ9H2W1 248 aa6.47□□□□□ -1.37
VPS4B-201ENST00000238497 TRAV21A0A0B4J279 112 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 K7EIL1 84 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 SNRPD3P62318 126 aaKnown RBP6.46□□□□□ -1.38
VPS4B-201ENST00000238497 CFHR3Q02985 330 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 LINC01619G3V211 115 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 IGLC3P0DOY3 106 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 DEFB131AP59861 70 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 GPHB5Q86YW7 130 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 DLX4Q92988 240 aaPredicted RBP6.46□□□□□ -1.38
VPS4B-201ENST00000238497 GOLT1BQ9Y3E0 138 aa6.46□□□□□ -1.38
VPS4B-201ENST00000238497 CBY3A6NI87 242 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 NUDT3O95989 172 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 IGLV1-40P01703 118 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 RPL39LQ96EH5 51 aaKnown RBP6.45□□□□□ -1.38
VPS4B-201ENST00000238497 A0A087X0K7 114 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 KIR2DL5BA0A0G2JN68 375 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 KIR2DL5BA0A0G2JPC4 375 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 LGALS1P09382 135 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms