RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NDUFA4L2Q9NRX3 87 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 C5orf63A6NC05 138 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 IGLL5B9A064 214 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 HAMPP81172 84 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 TMEM133Q9H2Q1 129 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 VSIRQ9H7M9 311 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 A0A0C4DFX4 3053 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 A0A1W2PR77 199 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 SMIM9A6NGZ8 99 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 RNF223E7ERA6 249 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 H2BFSP57053 126 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 GTSF1Q8WW33 167 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 PTH2Q96A98 100 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 OSTCQ9NRP0 149 aa2.27□□□□□ -2.05
SCN1A-219ENST00000641575 FAM236AA0A1B0GUQ0 79 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 FAM236BA0A1B0GV22 79 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 PRB2P02812 416 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 PIFOQ8TCI5 191 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CCL1P22362 96 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 RPL23P62829 140 aaKnown RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CFHR3Q02985 330 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 FAM27E3Q08E93 113 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 EXOC3-AS1Q8N2X6 119 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CARD19Q96LW7 228 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 BPESC1Q9GZL8 116 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 LTAP01374 205 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 MPZP25189 248 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 HLA-DMBP28068 263 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 PGFP49763 221 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF664Q8N3J9 261 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 LYPD6BQ8NI32 183 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 SLC25A39Q9BZJ4 359 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ORMDL1Q9P0S3 153 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 J3QL48 77 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 PGLYRP1O75594 196 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 RPL35AP18077 110 aaKnown RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CRYBA4P53673 196 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 RNF144BQ7Z419 303 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ZC2HC1BQ5TFG8 222 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 LYZL1Q6UWQ5 148 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ZCCHC24Q8N2G6 241 aaKnown RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 GLMPQ8WWB7 406 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CTGFP29279 349 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ZIC1Q15915 447 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 VMO1Q7Z5L0 202 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF501Q96CX3 271 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 NF1P21359 2839 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 H3BMG7 143 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF138P52744 262 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 RFLNAQ6ZTI6 216 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CCL4L1Q8NHW4 92 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 MRPL53Q96EL3 112 aaKnown RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 SMIM14Q96QK8 99 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 SCRT1Q9BWW7 348 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 COLCA2A8K830 154 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 F8W735 103 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CGAP01215 116 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 SLC25A47Q6Q0C1 308 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 POLR3KQ9Y2Y1 108 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 PATE3B3GLJ2 98 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 PYYP10082 97 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CCL2P13500 99 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 LINC01620Q4KN68 170 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 FGF16O43320 207 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 MYCNOSP40205 109 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CCL20P78556 96 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 SRSF3P84103 164 aaKnown RBP2.26□□□□□ -2.05
SCN1A-219ENST00000641575 IGF2BP2-AS1Q96M15 143 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 TCF19Q9Y242 345 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 CCL26Q9Y258 94 aa2.26□□□□□ -2.05
SCN1A-219ENST00000641575 TRAV26-1A0A087WT03 109 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 NDUFV3P56181 108 aaKnown RBP2.25□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF876PQ49A33 203 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 MRPS18BQ9Y676 258 aaKnown RBP2.25□□□□□ -2.05
SCN1A-219ENST00000641575 LOC101059948A0A1B0GTJ6 334 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 A4D1N5 150 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 FAM120AOSQ5T036 256 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 C8orf49Q96NF6 230 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 PPP1R3EQ9H7J1 279 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 A0A0B4J2C4 111 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 PSMB8P28062 276 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 AGMATQ9BSE5 352 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 LYPD3O95274 346 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 GZMMP51124 257 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 TM2D1Q9BX74 207 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 CXCL1P09341 107 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 REG3GQ6UW15 175 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 TRBV24-1A0A075B6N3 115 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 LY6G6CO95867 125 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 Q5BKY6 102 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 SCRT2Q9NQ03 307 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 IGKV1D-16P01601 117 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 IGKV1-16P04430 117 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 CRYGSP22914 178 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 Q6ZVH6 145 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 FGFRL1Q8N441 504 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 HCSTQ9UBK5 93 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 PRO1854Q9UHT4 67 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 THSD7AQ9UPZ6 1657 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV2OR16-5A0A0B4J2B6 119 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms