RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZNF80P51504 273 aaPredicted RBP12.65□□□□□ -0.38
CLN3-247ENST00000636351 MEF2BQ02080 365 aaPredicted RBP12.65□□□□□ -0.38
CLN3-247ENST00000636351 TXNDC17Q9BRA2 123 aa12.65□□□□□ -0.38
CLN3-247ENST00000636351 ZFP30Q9Y2G7 519 aa12.65□□□□□ -0.38
CLN3-247ENST00000636351 DEFB131BA0A096LNP1 70 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 IGLL5B9A064 214 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 S100A9P06702 114 aaKnown RBP12.64□□□□□ -0.39
CLN3-247ENST00000636351 PFN1P07737 140 aaKnown RBP12.64□□□□□ -0.39
CLN3-247ENST00000636351 TAGLN2P37802 199 aaKnown RBP12.64□□□□□ -0.39
CLN3-247ENST00000636351 TCTAP57738 103 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 IBA57Q5T440 356 aaKnown RBP12.64□□□□□ -0.39
CLN3-247ENST00000636351 C11orf72Q8NBR9 251 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 SDF2L1Q9HCN8 221 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 VAX2Q9UIW0 290 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 APLNQ9ULZ1 77 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 KLF12Q9Y4X4 402 aa12.64□□□□□ -0.39
CLN3-247ENST00000636351 TRBV6-1A0A0K0K1D8 114 aa12.63□□□□□ -0.39
CLN3-247ENST00000636351 PDE6DO43924 150 aa12.63□□□□□ -0.39
CLN3-247ENST00000636351 LTAP01374 205 aa12.63□□□□□ -0.39
CLN3-247ENST00000636351 TCL1AP56279 114 aa12.63□□□□□ -0.39
CLN3-247ENST00000636351 NHLRC2Q8NBF2 726 aa12.63□□□□□ -0.39
CLN3-247ENST00000636351 KIAA1109Q2LD37 5005 aa12.63□□□□□ -0.39
CLN3-247ENST00000636351 DNAH6Q9C0G6 4158 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 TRGV1A0A0A0MS02 117 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 GAGE12BA1L429 117 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 GAGE7O76087 117 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 GAGE12FP0CL80 117 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 GAGE12GP0CL81 117 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 GAGE12IP0CL82 117 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 DAZ2Q13117 558 aaKnown RBP12.62□□□□□ -0.39
CLN3-247ENST00000636351 TEX261Q6UWH6 196 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 C11orf52Q96A22 123 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 ZC2HC1AQ96GY0 325 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 KCNS1Q96KK3 526 aa12.62□□□□□ -0.39
CLN3-247ENST00000636351 RPL35P42766 123 aaKnown RBP12.61□□□□□ -0.39
CLN3-247ENST00000636351 Q6ZTI0 123 aa12.61□□□□□ -0.39
CLN3-247ENST00000636351 BAGE2Q86Y30 109 aa12.61□□□□□ -0.39
CLN3-247ENST00000636351 MDFICQ9P1T7 246 aa12.61□□□□□ -0.39
CLN3-247ENST00000636351 PCLOQ9Y6V0 5065 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 TRGV2A0A075B6R0 118 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 FABP5P3A8MUU1 101 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 TYMSP04818 313 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 TDRG1Q3Y452 100 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 FAM162BQ5T6X4 162 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 DERL1Q9BUN8 251 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 MED9Q9NWA0 146 aa12.6□□□□□ -0.39
CLN3-247ENST00000636351 MRPL16Q9NX20 251 aaKnown RBP12.6□□□□□ -0.39
CLN3-247ENST00000636351 GNRH2O43555 120 aa12.59□□□□□ -0.39
CLN3-247ENST00000636351 SH2D1AO60880 128 aa12.59□□□□□ -0.39
CLN3-247ENST00000636351 ATP5G1P05496 136 aa12.59□□□□□ -0.39
CLN3-247ENST00000636351 TOR2AQ5JU69 321 aa12.59□□□□□ -0.39
CLN3-247ENST00000636351 LYPD6BQ8NI32 183 aa12.59□□□□□ -0.39
CLN3-247ENST00000636351 PCNPQ8WW12 178 aaKnown RBP12.59□□□□□ -0.39
CLN3-247ENST00000636351 C11orf21Q9P2W6 132 aa12.59□□□□□ -0.39
CLN3-247ENST00000636351 IGHV3-16A0A0C4DH30 117 aa12.58□□□□□ -0.4
CLN3-247ENST00000636351 RBFOX3A6NFN3 312 aa12.58□□□□□ -0.4
CLN3-247ENST00000636351 F5H768 121 aa12.58□□□□□ -0.4
CLN3-247ENST00000636351 ORM1P02763 201 aa12.58□□□□□ -0.4
CLN3-247ENST00000636351 CENPWQ5EE01 88 aa12.58□□□□□ -0.4
CLN3-247ENST00000636351 EIF5A2Q9GZV4 153 aaKnown RBP12.58□□□□□ -0.4
CLN3-247ENST00000636351 IGHV4-4A0A075B6R2 117 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 B4DEV8 164 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 M0R036 132 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 SPINK4O60575 86 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 PRR27Q6MZM9 219 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 COX8CQ7Z4L0 72 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 LINC00612Q8N6U2 182 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 SPXQ9BT56 116 aa12.57□□□□□ -0.4
CLN3-247ENST00000636351 MGST1P10620 155 aaKnown RBP12.56□□□□□ -0.4
CLN3-247ENST00000636351 S100A4P26447 101 aaKnown RBP12.56□□□□□ -0.4
CLN3-247ENST00000636351 GNG4P50150 75 aa12.56□□□□□ -0.4
CLN3-247ENST00000636351 CRIP1P50238 77 aa12.56□□□□□ -0.4
CLN3-247ENST00000636351 ZNF506Q5JVG8 444 aa12.56□□□□□ -0.4
CLN3-247ENST00000636351 FAT2Q9NYQ8 4349 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 IGKV3D-20A0A0C4DH25 116 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 RAB19A4D1S5 217 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 ASIPP42127 132 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 CEBPGP53567 150 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 OR5I1Q13606 314 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 ZNF674Q2M3X9 581 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 LGALS9BQ3B8N2 356 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 NDUFAF3Q9BU61 184 aa12.55□□□□□ -0.4
CLN3-247ENST00000636351 DNAH2Q9P225 4427 aa12.54□□□□□ -0.4
CLN3-247ENST00000636351 TMSB15BA0A087X1C1 80 aa12.54□□□□□ -0.4
CLN3-247ENST00000636351 M0R2P5 195 aa12.54□□□□□ -0.4
CLN3-247ENST00000636351 TMEM88Q6PEY1 159 aa12.54□□□□□ -0.4
CLN3-247ENST00000636351 FAM210AQ96ND0 272 aa12.54□□□□□ -0.4
CLN3-247ENST00000636351 IGHV3-53P01767 116 aa12.53□□□□□ -0.4
CLN3-247ENST00000636351 FAM210BQ96KR6 192 aa12.53□□□□□ -0.4
CLN3-247ENST00000636351 MLST8Q9BVC4 326 aa12.53□□□□□ -0.4
CLN3-247ENST00000636351 KRBOX1C9JBD0 128 aa12.52□□□□□ -0.41
CLN3-247ENST00000636351 TMEM250H0YL14 139 aa12.52□□□□□ -0.41
CLN3-247ENST00000636351 LINC01559Q495D7 138 aa12.52□□□□□ -0.41
CLN3-247ENST00000636351 LINC00336Q6ZUF6 198 aa12.52□□□□□ -0.41
CLN3-247ENST00000636351 GRIFINA4D1Z8 144 aa12.51□□□□□ -0.41
CLN3-247ENST00000636351 C9JCJ5 164 aa12.51□□□□□ -0.41
CLN3-247ENST00000636351 H3BVH4 76 aa12.51□□□□□ -0.41
CLN3-247ENST00000636351 DAZAP1Q96EP5 407 aaKnown RBP12.51□□□□□ -0.41
CLN3-247ENST00000636351 PARLQ9H300 379 aa12.51□□□□□ -0.41
CLN3-247ENST00000636351 TRBV20OR9-2A0A075B6H5 130 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 234.4 ms