RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RYR3Q15413 4870 aa13.65□□□□□ -0.22
SQSTM1-216ENST00000626660 SH2D1AO60880 128 aa13.64□□□□□ -0.23
SQSTM1-216ENST00000626660 NDUFS6O75380 124 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-216ENST00000626660 TCL1AP56279 114 aa13.64□□□□□ -0.23
SQSTM1-216ENST00000626660 DAZ2Q13117 558 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-216ENST00000626660 C12orf74Q32Q52 190 aa13.64□□□□□ -0.23
SQSTM1-216ENST00000626660 C11orf72Q8NBR9 251 aa13.64□□□□□ -0.23
SQSTM1-216ENST00000626660 RAB19A4D1S5 217 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 ORM1P02763 201 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 DEFB130BP0DP73 79 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 DEFB130AP0DP74 79 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 CEBPGP53567 150 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 ZNF674Q2M3X9 581 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 PHLDA1Q8WV24 401 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 SMIM12Q96EX1 92 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 MLST8Q9BVC4 326 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 C11orf21Q9P2W6 132 aa13.63□□□□□ -0.23
SQSTM1-216ENST00000626660 NUPR2A6NF83 97 aa13.62□□□□□ -0.23
SQSTM1-216ENST00000626660 GNRH2O43555 120 aa13.62□□□□□ -0.23
SQSTM1-216ENST00000626660 TYMSP04818 313 aa13.62□□□□□ -0.23
SQSTM1-216ENST00000626660 CRIP1P50238 77 aa13.62□□□□□ -0.23
SQSTM1-216ENST00000626660 Q6ZTC4 211 aa13.62□□□□□ -0.23
SQSTM1-216ENST00000626660 PARLQ9H300 379 aa13.62□□□□□ -0.23
SQSTM1-216ENST00000626660 TRAV10A0A0B4J240 114 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 MGST1P10620 155 aaKnown RBP13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 IFITM2Q01629 132 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 PEA15Q15121 130 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 PRR27Q6MZM9 219 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 SPXQ9BT56 116 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 BIN3Q9NQY0 253 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 MDFICQ9P1T7 246 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 DNAH7Q8WXX0 4024 aa13.61□□□□□ -0.23
SQSTM1-216ENST00000626660 IGHV3-16A0A0C4DH30 117 aa13.6□□□□□ -0.23
SQSTM1-216ENST00000626660 B4DEV8 164 aa13.6□□□□□ -0.23
SQSTM1-216ENST00000626660 TRBV20OR9-2A0A075B6H5 130 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 TRGV1A0A0A0MS02 117 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 C9JCJ5 164 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 M0R036 132 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 SRP19P09132 144 aaKnown RBP13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 CLLU1Q5K131 121 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 CASC10Q5T4H9 136 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 CEMP1Q6PRD7 247 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 SMDT1Q9H4I9 107 aa13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 KLK5Q9Y337 293 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-216ENST00000626660 IGKV3D-20A0A0C4DH25 116 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 GAGE12BA1L429 117 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 SPINK4O60575 86 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 GAGE7O76087 117 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 GAGE12FP0CL80 117 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 GAGE12GP0CL81 117 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 GAGE12IP0CL82 117 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 S100A4P26447 101 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 ASIPP42127 132 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 OR5I1Q13606 314 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 LINC01559Q495D7 138 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 Q6ZTI0 123 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 DAZAP1Q96EP5 407 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 SMIM7Q9BQ49 75 aa13.58□□□□□ -0.24
SQSTM1-216ENST00000626660 DEFB131BA0A096LNP1 70 aa13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 KRBOX1C9JBD0 128 aa13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 IGLV2-8P01709 118 aa13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 HTN3P15516 51 aa13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 LGALS9BQ3B8N2 356 aa13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 LINC00612Q8N6U2 182 aa13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 MRPL16Q9NX20 251 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-216ENST00000626660 TRGV2A0A075B6R0 118 aa13.56□□□□□ -0.24
SQSTM1-216ENST00000626660 TMSB15BA0A087X1C1 80 aa13.56□□□□□ -0.24
SQSTM1-216ENST00000626660 PGPEP1LA6NFU8 196 aa13.56□□□□□ -0.24
SQSTM1-216ENST00000626660 ATP5G1P05496 136 aa13.56□□□□□ -0.24
SQSTM1-216ENST00000626660 ZNF727A8MUV8 499 aa13.55□□□□□ -0.24
SQSTM1-216ENST00000626660 M0R2P5 195 aa13.55□□□□□ -0.24
SQSTM1-216ENST00000626660 GRIFINA4D1Z8 144 aa13.54□□□□□ -0.24
SQSTM1-216ENST00000626660 SRSF3P84103 164 aaKnown RBP13.54□□□□□ -0.24
SQSTM1-216ENST00000626660 FAM74A3Q4VXF1 159 aa13.54□□□□□ -0.24
SQSTM1-216ENST00000626660 OCC1Q8TAD7 63 aa13.54□□□□□ -0.24
SQSTM1-216ENST00000626660 C9orf85Q96MD7 179 aa13.54□□□□□ -0.24
SQSTM1-216ENST00000626660 P01737 135 aa13.53□□□□□ -0.24
SQSTM1-216ENST00000626660 RNASE3P12724 160 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-216ENST00000626660 DNLZQ5SXM8 178 aa13.53□□□□□ -0.24
SQSTM1-216ENST00000626660 LY96Q9Y6Y9 160 aa13.53□□□□□ -0.24
SQSTM1-216ENST00000626660 MUC4Q99102 2169 aa13.53□□□□□ -0.24
SQSTM1-216ENST00000626660 C9JQL5 133 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 F5H768 121 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 H3BVH4 76 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 CXCL1P09341 107 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 RPL19P84098 196 aaKnown RBP13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 RASL10AQ92737 203 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 C18orf15Q96N68 181 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 IL36BQ9NZH7 164 aa13.52□□□□□ -0.25
SQSTM1-216ENST00000626660 C19orf71A6NCJ1 209 aa13.51□□□□□ -0.25
SQSTM1-216ENST00000626660 IGLL5B9A064 214 aa13.51□□□□□ -0.25
SQSTM1-216ENST00000626660 RPS20P60866 119 aaKnown RBP13.51□□□□□ -0.25
SQSTM1-216ENST00000626660 ZNF876PQ49A33 203 aa13.51□□□□□ -0.25
SQSTM1-216ENST00000626660 OR2D3Q8NGH3 330 aa13.51□□□□□ -0.25
SQSTM1-216ENST00000626660 XKRY2A2RUG3 117 aa13.5□□□□□ -0.25
SQSTM1-216ENST00000626660 K7EN84 100 aa13.5□□□□□ -0.25
SQSTM1-216ENST00000626660 ARMS2P0C7Q2 107 aa13.5□□□□□ -0.25
SQSTM1-216ENST00000626660 SOHLH1Q5JUK2 328 aa13.5□□□□□ -0.25
SQSTM1-216ENST00000626660 PTH2Q96A98 100 aa13.5□□□□□ -0.25
SQSTM1-216ENST00000626660 FAM210BQ96KR6 192 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms