RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GHRHP01286 108 aa14.15□□□□□ -0.14
UPF3A-211ENST00000618700 HTN1P15515 57 aa14.15□□□□□ -0.14
UPF3A-211ENST00000618700 ZNF674Q2M3X9 581 aa14.15□□□□□ -0.14
UPF3A-211ENST00000618700 MUC21Q5SSG8 566 aa14.15□□□□□ -0.14
UPF3A-211ENST00000618700 C16orf74Q96GX8 76 aa14.15□□□□□ -0.14
UPF3A-211ENST00000618700 FABP5P3A8MUU1 101 aa14.14□□□□□ -0.15
UPF3A-211ENST00000618700 SH2D1AO60880 128 aa14.14□□□□□ -0.15
UPF3A-211ENST00000618700 CEBPGP53567 150 aa14.14□□□□□ -0.15
UPF3A-211ENST00000618700 FAM162BQ5T6X4 162 aa14.14□□□□□ -0.15
UPF3A-211ENST00000618700 FAM159AQ6UWV7 190 aa14.14□□□□□ -0.15
UPF3A-211ENST00000618700 ZNF493Q6ZR52 646 aa14.14□□□□□ -0.15
UPF3A-211ENST00000618700 CBY3A6NI87 242 aa14.13□□□□□ -0.15
UPF3A-211ENST00000618700 C11orf72Q8NBR9 251 aa14.13□□□□□ -0.15
UPF3A-211ENST00000618700 NAGKQ9UJ70 344 aa14.13□□□□□ -0.15
UPF3A-211ENST00000618700 TP53TG3Q9ULZ0 132 aa14.13□□□□□ -0.15
UPF3A-211ENST00000618700 PGPEP1LA6NFU8 196 aa14.12□□□□□ -0.15
UPF3A-211ENST00000618700 IL17DQ8TAD2 202 aa14.12□□□□□ -0.15
UPF3A-211ENST00000618700 SMIM7Q9BQ49 75 aa14.12□□□□□ -0.15
UPF3A-211ENST00000618700 IBA57Q5T440 356 aaKnown RBP14.11□□□□□ -0.15
UPF3A-211ENST00000618700 KCNS1Q96KK3 526 aa14.11□□□□□ -0.15
UPF3A-211ENST00000618700 SDF2L1Q9HCN8 221 aa14.11□□□□□ -0.15
UPF3A-211ENST00000618700 TRGV11A0A075B6L2 103 aa14.1□□□□□ -0.15
UPF3A-211ENST00000618700 IGKV3D-20A0A0C4DH25 116 aa14.1□□□□□ -0.15
UPF3A-211ENST00000618700 EMP1P54849 157 aa14.1□□□□□ -0.15
UPF3A-211ENST00000618700 PRR27Q6MZM9 219 aa14.1□□□□□ -0.15
UPF3A-211ENST00000618700 CELA1Q9UNI1 258 aa14.1□□□□□ -0.15
UPF3A-211ENST00000618700 LINC00862A6NCI5 91 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 ZNF727A8MUV8 499 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 K7EN84 100 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 TYMSP04818 313 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 MGST1P10620 155 aaKnown RBP14.09□□□□□ -0.15
UPF3A-211ENST00000618700 FAM74A3Q4VXF1 159 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 DKK2Q9UBU2 259 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 LY96Q9Y6Y9 160 aa14.09□□□□□ -0.15
UPF3A-211ENST00000618700 IGHV3-16A0A0C4DH30 117 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 C19orf71A6NCJ1 209 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 GNRH2O43555 120 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 TCL1AP56279 114 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 DAZ2Q13117 558 aaKnown RBP14.08□□□□□ -0.16
UPF3A-211ENST00000618700 FAM222AQ5U5X8 452 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 ZNF575Q86XF7 245 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 OCC1Q8TAD7 63 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 BIN3Q9NQY0 253 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 GSN-AS1Q9NRJ2 163 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 MDFICQ9P1T7 246 aa14.08□□□□□ -0.16
UPF3A-211ENST00000618700 TIMM8BQ9Y5J9 83 aaPredicted RBP14.08□□□□□ -0.16
UPF3A-211ENST00000618700 TEX48A0A1B0GUV7 120 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 LYRM9A8MSI8 78 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 B4DEV8 164 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 KRBOX1C9JBD0 128 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 ORM1P02763 201 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 ZNF415Q09FC8 603 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 UQCC3Q6UW78 93 aa14.07□□□□□ -0.16
UPF3A-211ENST00000618700 SNURFLB1AK76 121 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 M0R036 132 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 SPART-AS1P0CW21 52 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 OR5I1Q13606 314 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 SOHLH1Q5JUK2 328 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 LINC01551Q86U37 167 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 COMMD7Q86VX2 200 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 WWC2-AS2Q96NR7 200 aa14.06□□□□□ -0.16
UPF3A-211ENST00000618700 NOP10Q9NPE3 64 aaKnown RBP14.06□□□□□ -0.16
UPF3A-211ENST00000618700 CXorf65A6NEN9 183 aa14.05□□□□□ -0.16
UPF3A-211ENST00000618700 SFTA3P0C7M3 94 aa14.05□□□□□ -0.16
UPF3A-211ENST00000618700 C11orf45Q8TAV5 145 aa14.05□□□□□ -0.16
UPF3A-211ENST00000618700 DNLZQ5SXM8 178 aa14.04□□□□□ -0.16
UPF3A-211ENST00000618700 LINC00612Q8N6U2 182 aa14.04□□□□□ -0.16
UPF3A-211ENST00000618700 SPINK4O60575 86 aa14.03□□□□□ -0.16
UPF3A-211ENST00000618700 CXCL1P09341 107 aa14.03□□□□□ -0.16
UPF3A-211ENST00000618700 RNASE3P12724 160 aaKnown RBP14.03□□□□□ -0.16
UPF3A-211ENST00000618700 NANOS2P60321 138 aaKnown RBP14.03□□□□□ -0.16
UPF3A-211ENST00000618700 RPL19P84098 196 aaKnown RBP14.03□□□□□ -0.16
UPF3A-211ENST00000618700 TMEM241Q24JQ0 296 aa14.03□□□□□ -0.16
UPF3A-211ENST00000618700 C12orf74Q32Q52 190 aa14.03□□□□□ -0.16
UPF3A-211ENST00000618700 C9orf85Q96MD7 179 aa14.03□□□□□ -0.16
UPF3A-211ENST00000618700 NAT8Q9UHE5 227 aa14.03□□□□□ -0.16
UPF3A-211ENST00000618700 ASIPP42127 132 aa14.02□□□□□ -0.17
UPF3A-211ENST00000618700 DAZAP1Q96EP5 407 aaKnown RBP14.02□□□□□ -0.17
UPF3A-211ENST00000618700 SPXQ9BT56 116 aa14.02□□□□□ -0.17
UPF3A-211ENST00000618700 TMSB15BA0A087X1C1 80 aa14.01□□□□□ -0.17
UPF3A-211ENST00000618700 P01737 135 aa14.01□□□□□ -0.17
UPF3A-211ENST00000618700 RPL23P62829 140 aaKnown RBP14.01□□□□□ -0.17
UPF3A-211ENST00000618700 FAM231DQ6ZW35 169 aa14.01□□□□□ -0.17
UPF3A-211ENST00000618700 NUDT10Q8NFP7 164 aa14.01□□□□□ -0.17
UPF3A-211ENST00000618700 NUDT11Q96G61 164 aa14.01□□□□□ -0.17
UPF3A-211ENST00000618700 RNASE7Q9H1E1 156 aaKnown RBP14.01□□□□□ -0.17
UPF3A-211ENST00000618700 GRIFINA4D1Z8 144 aa14□□□□□ -0.17
UPF3A-211ENST00000618700 LGALS9BQ3B8N2 356 aa14□□□□□ -0.17
UPF3A-211ENST00000618700 Q6ZTC4 211 aa14□□□□□ -0.17
UPF3A-211ENST00000618700 Q6ZTI0 123 aa14□□□□□ -0.17
UPF3A-211ENST00000618700 IL36BQ9NZH7 164 aa14□□□□□ -0.17
UPF3A-211ENST00000618700 TRGV1A0A0A0MS02 117 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 EREGO14944 169 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 DEFB130BP0DP73 79 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 DEFB130AP0DP74 79 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 S100A4P26447 101 aaKnown RBP13.99□□□□□ -0.17
UPF3A-211ENST00000618700 DAD1P61803 113 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 OR2D3Q8NGH3 330 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 ISOC2Q96AB3 205 aa13.99□□□□□ -0.17
UPF3A-211ENST00000618700 MRPL16Q9NX20 251 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms