RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 NUP210Q8TEM1 1887 aaPredicted RBP11.04□□□□□ -0.64
CPSF1-212ENST00000616140 F6UB75 175 aa11.04□□□□□ -0.64
CPSF1-212ENST00000616140 USP9XQ93008 2570 aaPredicted RBP11.04□□□□□ -0.64
CPSF1-212ENST00000616140 GAGE12JA6NER3 117 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 GAGE1Q13065 139 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 GAGE4Q13068 117 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 GAGE5Q13069 117 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 IGFL2Q6UWQ7 119 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 PRSS33Q8NF86 280 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 DSCAML1Q8TD84 2053 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 Q6ZVH6 145 aa11.03□□□□□ -0.64
CPSF1-212ENST00000616140 WIPF2Q8TF74 440 aaPredicted RBP11.03□□□□□ -0.64
CPSF1-212ENST00000616140 LEPROTO15243 131 aa11.02□□□□□ -0.64
CPSF1-212ENST00000616140 TDRG1Q3Y452 100 aa11.02□□□□□ -0.64
CPSF1-212ENST00000616140 TMEM141Q96I45 108 aa11.02□□□□□ -0.64
CPSF1-212ENST00000616140 I3L3M4 83 aa11.02□□□□□ -0.65
CPSF1-212ENST00000616140 K7EP13 123 aa11.02□□□□□ -0.65
CPSF1-212ENST00000616140 SPINK8P0C7L1 97 aa11.02□□□□□ -0.65
CPSF1-212ENST00000616140 FOXE3Q13461 319 aa11.02□□□□□ -0.65
CPSF1-212ENST00000616140 ZNF462Q96JM2 2506 aa11.02□□□□□ -0.65
CPSF1-212ENST00000616140 IGKV1OR2-108A0A075B7D4 117 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 IGHV3-38A0A0C4DH36 116 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 KIR2DL5BA0A0G2JN68 375 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 KIR2DL5BA0A0G2JPC4 375 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 SPRY2O43597 315 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 HLA-DRB4P13762 266 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 KIR2DL5AQ8N109 375 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 HLA-DRB4X5D2U9 266 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 K7EIM0 57 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 CFHR3Q02985 330 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 SP5Q6BEB4 398 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-212ENST00000616140 KIF26AQ9ULI4 1882 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-212ENST00000616140 GP9P14770 177 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 JMJD1CQ15652 2540 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 USP9YO00507 2555 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-212ENST00000616140 GATA1P15976 413 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-212ENST00000616140 RITA1Q96K30 269 aa11.01□□□□□ -0.65
CPSF1-212ENST00000616140 WISP2O76076 250 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 ZNRF2Q8NHG8 242 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 IGHV7-4-1A0A0J9YVY3 117 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 A0A1W2PNU3 283 aaPredicted RBP11□□□□□ -0.65
CPSF1-212ENST00000616140 VWC2LB2RUY7 222 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 IGLV2-14P01704 120 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 LGALS1P09382 135 aaKnown RBP11□□□□□ -0.65
CPSF1-212ENST00000616140 CR1LQ2VPA4 569 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 AMTNQ6UX39 209 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 FAM167A-AS1Q96KT0 104 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 LAMTOR3Q9UHA4 124 aa11□□□□□ -0.65
CPSF1-212ENST00000616140 K7ERJ3 54 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 HIST1H4AP62805 103 aaKnown RBP10.99□□□□□ -0.65
CPSF1-212ENST00000616140 KLF5Q13887 457 aaPredicted RBP10.99□□□□□ -0.65
CPSF1-212ENST00000616140 PCP2Q8IVA1 136 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 NDUFA12Q9UI09 145 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 TRBV20-1A0A075B6N2 111 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 LINC01619G3V211 115 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 I3L2K1 104 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 OR11H6Q8NGC7 330 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 ZFYVE26Q68DK2 2539 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 H3BMG7 143 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 GNRH2O43555 120 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 LINC00173Q6ZV60 143 aa10.99□□□□□ -0.65
CPSF1-212ENST00000616140 CFHR4Q92496 578 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 MSRB1Q9NZV6 116 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 C20orf78Q9BR46 151 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 A0A1W2PPM0 123 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 MSMPQ1L6U9 139 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 KMT2EQ8IZD2 1858 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 IGHV7-81A0A0B4J1V7 117 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 CENPVL3A0A0U1RRI6 287 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 K7EP34 96 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 SEM1Q6ZVN7 128 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 SPRY4Q9C004 299 aa10.98□□□□□ -0.65
CPSF1-212ENST00000616140 TSSC4Q9Y5U2 329 aaPredicted RBP10.98□□□□□ -0.65
CPSF1-212ENST00000616140 J3QQQ9 107 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 FRMD6-AS1P0C7T7 363 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 FGF6P10767 208 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 PFN2P35080 140 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 SS18Q15532 418 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 MRPL36Q9P0J6 103 aaKnown RBP10.97□□□□□ -0.65
CPSF1-212ENST00000616140 PRSS29PA6NIE9 313 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 E7EUB6 86 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 GAGE7O76087 117 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 GAGE12FP0CL80 117 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 GAGE12GP0CL81 117 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 GAGE12IP0CL82 117 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 AZU1P20160 251 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 TCF15Q12870 199 aa10.97□□□□□ -0.65
CPSF1-212ENST00000616140 CTSGP08311 255 aa10.96□□□□□ -0.65
CPSF1-212ENST00000616140 PRO1854Q9UHT4 67 aa10.96□□□□□ -0.65
CPSF1-212ENST00000616140 HOXB4P17483 251 aaPredicted RBP10.96□□□□□ -0.65
CPSF1-212ENST00000616140 SPAG8Q99932 426 aaPredicted RBP10.96□□□□□ -0.66
CPSF1-212ENST00000616140 RNASE13Q5GAN3 156 aaKnown RBP10.96□□□□□ -0.66
CPSF1-212ENST00000616140 IGLV11-55A0A075B6I3 123 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 GAGE2AQ6NT46 116 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 CEND1Q8N111 149 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 Q96MF0 132 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 RNF114Q9Y508 228 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 TRBV25-1A0A075B6N4 114 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 Q6ZPA2 131 aa10.95□□□□□ -0.66
CPSF1-212ENST00000616140 C11orf1Q9H5F2 150 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms