RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 C9JQL5 133 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 APOC3P02656 99 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 DAD1P61803 113 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 MEF2BQ02080 365 aaPredicted RBP11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 TDRG1Q3Y452 100 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 FAM159AQ6UWV7 190 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 ZFP30Q9Y2G7 519 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 CARHSP1Q9Y2V2 147 aaKnown RBP11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 TRAV10A0A0B4J240 114 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 LTAP01374 205 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 PFN1P07737 140 aaKnown RBP11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 DEFB130BP0DP73 79 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 DEFB130AP0DP74 79 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 ADCYAP1P18509 176 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 IBA57Q5T440 356 aaKnown RBP11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 NAGKQ9UJ70 344 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 S100A9P06702 114 aaKnown RBP11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 TCL1AP56279 114 aa11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 DAZ2Q13117 558 aaKnown RBP11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 C10orf91Q5T1B1 145 aa11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 COX8CQ7Z4L0 72 aa11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 SVBPQ8N300 66 aa11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 C11orf52Q96A22 123 aa11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 KLK5Q9Y337 293 aaPredicted RBP11.75□□□□□ -0.53
CCDC28A-202ENST00000611852 DEFB131BA0A096LNP1 70 aa11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 NDUFS6O75380 124 aaKnown RBP11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 SRP19P09132 144 aaKnown RBP11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 SOHLH1Q5JUK2 328 aa11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 TMEM183AQ8IXX5 376 aa11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 LINC00612Q8N6U2 182 aa11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 C11orf21Q9P2W6 132 aa11.74□□□□□ -0.53
CCDC28A-202ENST00000611852 CEBPGP53567 150 aa11.73□□□□□ -0.53
CCDC28A-202ENST00000611852 ZC2HC1AQ96GY0 325 aa11.73□□□□□ -0.53
CCDC28A-202ENST00000611852 MDFICQ9P1T7 246 aa11.73□□□□□ -0.53
CCDC28A-202ENST00000611852 TRGV11A0A075B6L2 103 aa11.72□□□□□ -0.53
CCDC28A-202ENST00000611852 GNRH2O43555 120 aa11.72□□□□□ -0.53
CCDC28A-202ENST00000611852 PDE6DO43924 150 aa11.72□□□□□ -0.53
CCDC28A-202ENST00000611852 ZNF415Q09FC8 603 aa11.72□□□□□ -0.53
CCDC28A-202ENST00000611852 KCNS1Q96KK3 526 aa11.72□□□□□ -0.53
CCDC28A-202ENST00000611852 DERL1Q9BUN8 251 aa11.72□□□□□ -0.53
CCDC28A-202ENST00000611852 FABP5P3A8MUU1 101 aa11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 TMEM250H0YL14 139 aa11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 TYMSP04818 313 aa11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 RPL35P42766 123 aaKnown RBP11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 CRIP1P50238 77 aa11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 Q6ZTI0 123 aa11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 SDF2L1Q9HCN8 221 aa11.71□□□□□ -0.53
CCDC28A-202ENST00000611852 GAGE12BA1L429 117 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 SPINK4O60575 86 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 GAGE7O76087 117 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 SNAPINO95295 136 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 GAGE12FP0CL80 117 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 GAGE12GP0CL81 117 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 GAGE12IP0CL82 117 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 BAGE2Q86Y30 109 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 NHLRC2Q8NBF2 726 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 MLST8Q9BVC4 326 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 IGHV3-16A0A0C4DH30 117 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 IGLL5B9A064 214 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 HTN3P15516 51 aa11.7□□□□□ -0.54
CCDC28A-202ENST00000611852 TRGV1A0A0A0MS02 117 aa11.69□□□□□ -0.54
CCDC28A-202ENST00000611852 ATP5G1P05496 136 aa11.69□□□□□ -0.54
CCDC28A-202ENST00000611852 ZNF674Q2M3X9 581 aa11.69□□□□□ -0.54
CCDC28A-202ENST00000611852 LGALS9BQ3B8N2 356 aa11.69□□□□□ -0.54
CCDC28A-202ENST00000611852 FAM162BQ5T6X4 162 aa11.69□□□□□ -0.54
CCDC28A-202ENST00000611852 IGKV3D-20A0A0C4DH25 116 aa11.68□□□□□ -0.54
CCDC28A-202ENST00000611852 SH2D1AO60880 128 aa11.68□□□□□ -0.54
CCDC28A-202ENST00000611852 SPXQ9BT56 116 aa11.68□□□□□ -0.54
CCDC28A-202ENST00000611852 IGHV4-4A0A075B6R2 117 aa11.67□□□□□ -0.54
CCDC28A-202ENST00000611852 TCTAP57738 103 aa11.67□□□□□ -0.54
CCDC28A-202ENST00000611852 FAM74A3Q4VXF1 159 aa11.67□□□□□ -0.54
CCDC28A-202ENST00000611852 C18orf15Q96N68 181 aa11.67□□□□□ -0.54
CCDC28A-202ENST00000611852 MRPL16Q9NX20 251 aaKnown RBP11.67□□□□□ -0.54
CCDC28A-202ENST00000611852 KMT2CQ8NEZ4 4911 aaKnown RBP11.67□□□□□ -0.54
CCDC28A-202ENST00000611852 ORM1P02763 201 aa11.66□□□□□ -0.54
CCDC28A-202ENST00000611852 CENPWQ5EE01 88 aa11.66□□□□□ -0.54
CCDC28A-202ENST00000611852 SMIM7Q9BQ49 75 aa11.66□□□□□ -0.54
CCDC28A-202ENST00000611852 APLNQ9ULZ1 77 aa11.66□□□□□ -0.54
CCDC28A-202ENST00000611852 DYNC2H1Q8NCM8 4307 aaKnown RBP11.66□□□□□ -0.54
CCDC28A-202ENST00000611852 TRBV20OR9-2A0A075B6H5 130 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 TRGV2A0A075B6R0 118 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 ZNF727A8MUV8 499 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 F5H768 121 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 M0R036 132 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 IGLV2-8P01709 118 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 GNG4P50150 75 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 RASL10AQ92737 203 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 FAM210BQ96KR6 192 aa11.65□□□□□ -0.54
CCDC28A-202ENST00000611852 B4DEV8 164 aa11.65□□□□□ -0.55
CCDC28A-202ENST00000611852 RNASE3P12724 160 aaKnown RBP11.65□□□□□ -0.55
CCDC28A-202ENST00000611852 LINC01559Q495D7 138 aa11.65□□□□□ -0.55
CCDC28A-202ENST00000611852 CLRN3Q8NCR9 226 aa11.65□□□□□ -0.55
CCDC28A-202ENST00000611852 C9orf85Q96MD7 179 aa11.65□□□□□ -0.55
CCDC28A-202ENST00000611852 PARLQ9H300 379 aa11.65□□□□□ -0.55
CCDC28A-202ENST00000611852 PLECQ15149 4684 aaKnown RBP11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 LCE6AA0A183 80 aa11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 M0R2P5 195 aa11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 SCO1O75880 301 aa11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 PNRC1Q12796 327 aaPredicted RBP11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 TMEM88Q6PEY1 159 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 290.2 ms