RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TRGC2P03986 189 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 CRISP2P16562 243 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 APOC4P55056 127 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 KIR3DS1Q14943 382 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 EBLN2Q6P2I7 272 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 ZFAND2AQ8N6M9 145 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 OR10G8Q8NGN5 311 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 ODF3Q96PU9 254 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 CSTL1Q9H114 145 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 ZNF492Q9P255 531 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 TP53TG1Q9Y2A0 90 aa6.33□□□□□ -1.4
TRIM28-214ENST00000600840 TRAV8-1A0A0A6YYK1 113 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 TRBV7-9A0A0J9YWB2 115 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 TRBV6-1A0A0K0K1D8 114 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 SERTM2A0A1B0GWG4 89 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 KLLNB2CW77 178 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 PEX7O00628 323 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 IGKV3-20P01619 116 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 MT-ND6P03923 174 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 TRGC1P0CF51 173 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 GNG4P50150 75 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 NDUFA6P56556 154 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 HIST1H1AQ02539 215 aaPredicted RBP6.32□□□□□ -1.4
TRIM28-214ENST00000600840 MORN3Q6PF18 240 aaPredicted RBP6.32□□□□□ -1.4
TRIM28-214ENST00000600840 CEMP1Q6PRD7 247 aaPredicted RBP6.32□□□□□ -1.4
TRIM28-214ENST00000600840 GOLT1AQ6ZVE7 132 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 COX8CQ7Z4L0 72 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 STHQ8IWL8 128 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 TMEM183AQ8IXX5 376 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 C1orf158Q8N1D5 194 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 ATG101Q9BSB4 218 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 OSTCQ9NRP0 149 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 LENEPQ9Y5L5 61 aa6.32□□□□□ -1.4
TRIM28-214ENST00000600840 MUC4Q99102 2169 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 SCO2A0A1W2PP80 73 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 DEFB4AO15263 64 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 ZNF324O75467 553 aaPredicted RBP6.31□□□□□ -1.4
TRIM28-214ENST00000600840 RBMY1A1P0DJD3 496 aaKnown RBP6.31□□□□□ -1.4
TRIM28-214ENST00000600840 RBMY1CP0DJD4 496 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 CSN1S1P47710 185 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 ZNF138P52744 262 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 RBMY1FQ15415 496 aaKnown RBP6.31□□□□□ -1.4
TRIM28-214ENST00000600840 PRR9Q5T870 116 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 WDR73Q6P4I2 378 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 RASL11AQ6T310 242 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 ZNF575Q86XF7 245 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 TMEM75Q8N9X5 138 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 OR4B1Q8NGF8 309 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 OR10J6PQ8NGY7 276 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 CMTM2Q8TAZ6 248 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 SGK494Q96LW2 274 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 MLST8Q9BVC4 326 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 IL36BQ9NZH7 164 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 PSG8Q9UQ74 426 aa6.31□□□□□ -1.4
TRIM28-214ENST00000600840 TRBV20OR9-2A0A075B6H5 130 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 TRAV34A0A0B4J273 112 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 A0A1W2PPQ1 181 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 M0R2Z0 102 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 PHOX2AO14813 284 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 IGLV2-8P01709 118 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 TMEM183BQ1AE95 376 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 ZNF705AQ6ZN79 300 aaPredicted RBP6.3□□□□□ -1.4
TRIM28-214ENST00000600840 Q6ZQT7 251 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 HIST3H2BBQ8N257 126 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 Q8TAT8 98 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 FRZBQ92765 325 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 DERL1Q9BUN8 251 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 KMT2AQ03164 3969 aa6.3□□□□□ -1.4
TRIM28-214ENST00000600840 HECTD4Q9Y4D8 3996 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 NUPR2A6NF83 97 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 FBLL1A6NHQ2 334 aaKnown RBP6.29□□□□□ -1.4
TRIM28-214ENST00000600840 GCGP01275 180 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 LTAP01374 205 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 CDKN1BP46527 198 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 CRIP1P50238 77 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 ZNF80P51504 273 aaPredicted RBP6.29□□□□□ -1.4
TRIM28-214ENST00000600840 FXYD7P58549 80 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 NANOS2P60321 138 aaKnown RBP6.29□□□□□ -1.4
TRIM28-214ENST00000600840 SPINK13Q1W4C9 94 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 TMEM78Q5T7P6 136 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 FAM231DQ6ZW35 169 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 OR11H2Q8NH07 326 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 OCC1Q8TAD7 63 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 PHLDA1Q8WV24 401 aaPredicted RBP6.29□□□□□ -1.4
TRIM28-214ENST00000600840 TMEM18Q96B42 140 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 IGF2BP2-AS1Q96M15 143 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 PACRGQ96M98 296 aaPredicted RBP6.29□□□□□ -1.4
TRIM28-214ENST00000600840 NIT2Q9NQR4 276 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 XCL2Q9UBD3 114 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 RPH3ALQ9UNE2 315 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 TRAPPC1Q9Y5R8 145 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 X6R8D5 127 aa6.29□□□□□ -1.4
TRIM28-214ENST00000600840 TRAV12-2A0A075B6T6 113 aa6.28□□□□□ -1.4
TRIM28-214ENST00000600840 CA1P00915 261 aaPredicted RBP6.28□□□□□ -1.4
TRIM28-214ENST00000600840 AMBPP02760 352 aa6.28□□□□□ -1.4
TRIM28-214ENST00000600840 ERVFC1-1P60608 527 aa6.28□□□□□ -1.4
TRIM28-214ENST00000600840 NUTF2P61970 127 aaKnown RBP6.28□□□□□ -1.4
TRIM28-214ENST00000600840 CENPWQ5EE01 88 aa6.28□□□□□ -1.4
TRIM28-214ENST00000600840 GFI1BQ5VTD9 330 aa6.28□□□□□ -1.4
TRIM28-214ENST00000600840 Q86TA4 180 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms