RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ZNF674Q2M3X9 581 aa13.77□□□□□ -0.21
UPF1-209ENST00000600310 Q6ZTC4 211 aa13.77□□□□□ -0.21
UPF1-209ENST00000600310 NHLRC2Q8NBF2 726 aa13.77□□□□□ -0.21
UPF1-209ENST00000600310 PHLDA1Q8WV24 401 aaPredicted RBP13.77□□□□□ -0.21
UPF1-209ENST00000600310 EIF5A2Q9GZV4 153 aaKnown RBP13.77□□□□□ -0.21
UPF1-209ENST00000600310 SDF2L1Q9HCN8 221 aa13.77□□□□□ -0.21
UPF1-209ENST00000600310 RAB19A4D1S5 217 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 GNRH2O43555 120 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 ZNF415Q09FC8 603 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 CENPWQ5EE01 88 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 CASC10Q5T4H9 136 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 FAM162BQ5T6X4 162 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 MDFICQ9P1T7 246 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 RYR3Q15413 4870 aa13.76□□□□□ -0.21
UPF1-209ENST00000600310 IGKV3D-20A0A0C4DH25 116 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 SH2D1AO60880 128 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 TYMSP04818 313 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 DAD1P61803 113 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 IFITM2Q01629 132 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 CEMP1Q6PRD7 247 aaPredicted RBP13.75□□□□□ -0.21
UPF1-209ENST00000600310 LINC00612Q8N6U2 182 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 SMIM12Q96EX1 92 aa13.75□□□□□ -0.21
UPF1-209ENST00000600310 IGHV3-16A0A0C4DH30 117 aa13.74□□□□□ -0.21
UPF1-209ENST00000600310 NUPR2A6NF83 97 aa13.74□□□□□ -0.21
UPF1-209ENST00000600310 DEFB130BP0DP73 79 aa13.74□□□□□ -0.21
UPF1-209ENST00000600310 DEFB130AP0DP74 79 aa13.74□□□□□ -0.21
UPF1-209ENST00000600310 RAB14P61106 215 aa13.74□□□□□ -0.21
UPF1-209ENST00000600310 TRBV20OR9-2A0A075B6H5 130 aa13.73□□□□□ -0.21
UPF1-209ENST00000600310 TRAV10A0A0B4J240 114 aa13.73□□□□□ -0.21
UPF1-209ENST00000600310 SPINK4O60575 86 aa13.73□□□□□ -0.21
UPF1-209ENST00000600310 IGLV2-8P01709 118 aa13.73□□□□□ -0.21
UPF1-209ENST00000600310 GNG4P50150 75 aa13.73□□□□□ -0.21
UPF1-209ENST00000600310 PARLQ9H300 379 aa13.73□□□□□ -0.21
UPF1-209ENST00000600310 ORM1P02763 201 aa13.72□□□□□ -0.21
UPF1-209ENST00000600310 LGALS9BQ3B8N2 356 aa13.72□□□□□ -0.21
UPF1-209ENST00000600310 SPXQ9BT56 116 aa13.72□□□□□ -0.21
UPF1-209ENST00000600310 C9JCJ5 164 aa13.71□□□□□ -0.21
UPF1-209ENST00000600310 SRP19P09132 144 aaKnown RBP13.71□□□□□ -0.21
UPF1-209ENST00000600310 LINC01559Q495D7 138 aa13.71□□□□□ -0.21
UPF1-209ENST00000600310 Q6ZTI0 123 aa13.71□□□□□ -0.21
UPF1-209ENST00000600310 KLK5Q9Y337 293 aaPredicted RBP13.71□□□□□ -0.21
UPF1-209ENST00000600310 DEFB131BA0A096LNP1 70 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 TRGV1A0A0A0MS02 117 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 GAGE12BA1L429 117 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 B4DEV8 164 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 KRBOX1C9JBD0 128 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 GAGE7O76087 117 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 GAGE12FP0CL80 117 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 GAGE12GP0CL81 117 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 GAGE12IP0CL82 117 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 PEA15Q15121 130 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 CLLU1Q5K131 121 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 C18orf15Q96N68 181 aa13.7□□□□□ -0.22
UPF1-209ENST00000600310 M0R036 132 aa13.69□□□□□ -0.22
UPF1-209ENST00000600310 MGST1P10620 155 aaKnown RBP13.69□□□□□ -0.22
UPF1-209ENST00000600310 PRR27Q6MZM9 219 aa13.69□□□□□ -0.22
UPF1-209ENST00000600310 C9orf85Q96MD7 179 aa13.69□□□□□ -0.22
UPF1-209ENST00000600310 SMDT1Q9H4I9 107 aa13.69□□□□□ -0.22
UPF1-209ENST00000600310 PGPEP1LA6NFU8 196 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 M0R2P5 195 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 RNASE3P12724 160 aaKnown RBP13.68□□□□□ -0.22
UPF1-209ENST00000600310 CEBPGP53567 150 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 SRSF3P84103 164 aaKnown RBP13.68□□□□□ -0.22
UPF1-209ENST00000600310 DNLZQ5SXM8 178 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 ZNF575Q86XF7 245 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 RASL10AQ92737 203 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 BIN3Q9NQY0 253 aa13.68□□□□□ -0.22
UPF1-209ENST00000600310 MRPL16Q9NX20 251 aaKnown RBP13.68□□□□□ -0.22
UPF1-209ENST00000600310 C9JQL5 133 aa13.67□□□□□ -0.22
UPF1-209ENST00000600310 ATP5G1P05496 136 aa13.67□□□□□ -0.22
UPF1-209ENST00000600310 ASIPP42127 132 aa13.67□□□□□ -0.22
UPF1-209ENST00000600310 OCC1Q8TAD7 63 aa13.67□□□□□ -0.22
UPF1-209ENST00000600310 TRGV2A0A075B6R0 118 aa13.66□□□□□ -0.22
UPF1-209ENST00000600310 C19orf71A6NCJ1 209 aa13.66□□□□□ -0.22
UPF1-209ENST00000600310 HTN3P15516 51 aa13.66□□□□□ -0.22
UPF1-209ENST00000600310 S100A4P26447 101 aaKnown RBP13.66□□□□□ -0.22
UPF1-209ENST00000600310 CXCL1P09341 107 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 OR5I1Q13606 314 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 PTH2Q96A98 100 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 DAZAP1Q96EP5 407 aaKnown RBP13.65□□□□□ -0.22
UPF1-209ENST00000600310 SMIM7Q9BQ49 75 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 IL36BQ9NZH7 164 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 LY96Q9Y6Y9 160 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 DNAH7Q8WXX0 4024 aa13.65□□□□□ -0.22
UPF1-209ENST00000600310 TMSB15BA0A087X1C1 80 aa13.64□□□□□ -0.23
UPF1-209ENST00000600310 GRIFINA4D1Z8 144 aa13.64□□□□□ -0.23
UPF1-209ENST00000600310 ZNF727A8MUV8 499 aa13.64□□□□□ -0.23
UPF1-209ENST00000600310 IGLL5B9A064 214 aa13.64□□□□□ -0.23
UPF1-209ENST00000600310 RPL19P84098 196 aaKnown RBP13.64□□□□□ -0.23
UPF1-209ENST00000600310 FAM210BQ96KR6 192 aa13.64□□□□□ -0.23
UPF1-209ENST00000600310 F5H768 121 aa13.63□□□□□ -0.23
UPF1-209ENST00000600310 K7EN84 100 aa13.63□□□□□ -0.23
UPF1-209ENST00000600310 TCTAP57738 103 aa13.63□□□□□ -0.23
UPF1-209ENST00000600310 H3BVH4 76 aa13.62□□□□□ -0.23
UPF1-209ENST00000600310 ARMS2P0C7Q2 107 aa13.62□□□□□ -0.23
UPF1-209ENST00000600310 FAM74A3Q4VXF1 159 aa13.62□□□□□ -0.23
UPF1-209ENST00000600310 SCRT2Q9NQ03 307 aa13.62□□□□□ -0.23
UPF1-209ENST00000600310 IGHV4-4A0A075B6R2 117 aa13.61□□□□□ -0.23
UPF1-209ENST00000600310 P01737 135 aa13.61□□□□□ -0.23
UPF1-209ENST00000600310 MED14OSP0DP75 135 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms