RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 C20orf173Q96LM9 149 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 MS4A6AQ9H2W1 248 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 PRAC2D3DTV9 90 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 OVOL1O14753 267 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 KRTDAPP60985 99 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 MRPL53Q96EL3 112 aaKnown RBP9.94□□□□□ -0.82
VRK3-205ENST00000593919 VGLL1Q99990 258 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 TPPP3Q9BW30 176 aa9.94□□□□□ -0.82
VRK3-205ENST00000593919 TMSB15BA0A087X1C1 80 aa9.93□□□□□ -0.82
VRK3-205ENST00000593919 SH2D1AO60880 128 aa9.93□□□□□ -0.82
VRK3-205ENST00000593919 ARMS2P0C7Q2 107 aa9.93□□□□□ -0.82
VRK3-205ENST00000593919 FOXA3P55318 350 aaPredicted RBP9.93□□□□□ -0.82
VRK3-205ENST00000593919 RNASEKQ6P5S7 137 aaKnown RBP9.93□□□□□ -0.82
VRK3-205ENST00000593919 CLEC5AQ9NY25 188 aa9.93□□□□□ -0.82
VRK3-205ENST00000593919 TCAPO15273 167 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 TFPI2P48307 235 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 KRTAP24-1Q3LI83 254 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 WFDC3Q8IUB2 231 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 AGRNO00468 2067 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 NOTCH3Q9UM47 2321 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 A0A1B0GUT8 65 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 TNFRSF6BO95407 300 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 ERCC8Q13216 396 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 SAPCD1Q5SSQ6 148 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 FAM162BQ5T6X4 162 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 ZNF738Q8NE65 137 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 DYNLRB2Q8TF09 96 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 PRR25Q96S07 402 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 CITED1Q99966 193 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 STAB1Q9NY15 2570 aa9.92□□□□□ -0.82
VRK3-205ENST00000593919 TMEM189A5PLL7 270 aa9.91□□□□□ -0.82
VRK3-205ENST00000593919 HSBP1O75506 76 aa9.91□□□□□ -0.82
VRK3-205ENST00000593919 SAMD13Q5VXD3 122 aa9.91□□□□□ -0.82
VRK3-205ENST00000593919 NIT1Q86X76 327 aa9.91□□□□□ -0.82
VRK3-205ENST00000593919 PRIMA1Q86XR5 153 aa9.91□□□□□ -0.82
VRK3-205ENST00000593919 NDUFAF3Q9BU61 184 aa9.91□□□□□ -0.82
VRK3-205ENST00000593919 RBAKDNA6NC62 111 aa9.9□□□□□ -0.82
VRK3-205ENST00000593919 K7EQG2 157 aa9.9□□□□□ -0.82
VRK3-205ENST00000593919 NUTF2P61970 127 aaKnown RBP9.9□□□□□ -0.82
VRK3-205ENST00000593919 RIGQ13278 110 aa9.9□□□□□ -0.82
VRK3-205ENST00000593919 DEFB114Q30KQ6 69 aa9.9□□□□□ -0.82
VRK3-205ENST00000593919 TMEM61Q8N0U2 210 aa9.9□□□□□ -0.82
VRK3-205ENST00000593919 LOC102724200A0A096LPH7 203 aaPredicted RBP9.9□□□□□ -0.83
VRK3-205ENST00000593919 ID1P41134 155 aa9.9□□□□□ -0.83
VRK3-205ENST00000593919 ZNF80P51504 273 aaPredicted RBP9.9□□□□□ -0.83
VRK3-205ENST00000593919 DEFB1P60022 68 aa9.9□□□□□ -0.83
VRK3-205ENST00000593919 FBLL1A6NHQ2 334 aaKnown RBP9.89□□□□□ -0.83
VRK3-205ENST00000593919 ZNF688P0C7X2 276 aa9.89□□□□□ -0.83
VRK3-205ENST00000593919 TDRG1Q3Y452 100 aa9.89□□□□□ -0.83
VRK3-205ENST00000593919 CD300EQ496F6 205 aaPredicted RBP9.89□□□□□ -0.83
VRK3-205ENST00000593919 BORCS7Q96B45 105 aa9.89□□□□□ -0.83
VRK3-205ENST00000593919 NDFIP1Q9BT67 221 aa9.89□□□□□ -0.83
VRK3-205ENST00000593919 SIGLEC8Q9NYZ4 499 aa9.89□□□□□ -0.83
VRK3-205ENST00000593919 COL6A5A8TX70 2615 aa9.89□□□□□ -0.83
VRK3-205ENST00000593919 M0R2Z0 102 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 Q6AWC8 147 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 LYZL1Q6UWQ5 148 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 TEX43Q6ZNM6 134 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 URB1-AS1Q96HZ7 61 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 MUC21A0A0G2JKD1 596 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 KIR2DL5BA0A0G2JN68 375 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 KIR2DL5BA0A0G2JPC4 375 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 MUC21A0A140T8X8 626 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 F6UB75 175 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 C3orf79P0CE67 100 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 SNRPD3P62318 126 aaKnown RBP9.88□□□□□ -0.83
VRK3-205ENST00000593919 PSMG4Q5JS54 123 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 MUC21Q5SSG8 566 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 C9orf47Q6ZRZ4 202 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 COX8CQ7Z4L0 72 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 KIR2DL5AQ8N109 375 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 Q8N976 141 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 AGPAT4-IT1Q9H0P7 198 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 PPP1R14DQ9NXH3 145 aa9.88□□□□□ -0.83
VRK3-205ENST00000593919 SAP30O75446 220 aa9.87□□□□□ -0.83
VRK3-205ENST00000593919 PMCHL1Q16048 86 aa9.87□□□□□ -0.83
VRK3-205ENST00000593919 TMEM78Q5T7P6 136 aa9.87□□□□□ -0.83
VRK3-205ENST00000593919 LINC00482Q8N8I6 264 aa9.87□□□□□ -0.83
VRK3-205ENST00000593919 VAMP8Q9BV40 100 aa9.87□□□□□ -0.83
VRK3-205ENST00000593919 PAM16Q9Y3D7 125 aa9.87□□□□□ -0.83
VRK3-205ENST00000593919 OR8A1Q8NGG7 326 aa9.86□□□□□ -0.83
VRK3-205ENST00000593919 OR10J6PQ8NGY7 276 aa9.86□□□□□ -0.83
VRK3-205ENST00000593919 A0A1B0GW15 77 aa9.86□□□□□ -0.83
VRK3-205ENST00000593919 HIST1H1AQ02539 215 aaPredicted RBP9.86□□□□□ -0.83
VRK3-205ENST00000593919 CHTOPQ9Y3Y2 248 aaKnown RBP9.86□□□□□ -0.83
VRK3-205ENST00000593919 TRAV2A0A0B4J234 112 aa9.85□□□□□ -0.83
VRK3-205ENST00000593919 ORM1P02763 201 aa9.85□□□□□ -0.83
VRK3-205ENST00000593919 ZNF138P52744 262 aa9.85□□□□□ -0.83
VRK3-205ENST00000593919 RPS20P60866 119 aaKnown RBP9.85□□□□□ -0.83
VRK3-205ENST00000593919 GATD1Q8NB37 220 aa9.85□□□□□ -0.83
VRK3-205ENST00000593919 FER1L6-AS1Q8NA97 138 aa9.84□□□□□ -0.83
VRK3-205ENST00000593919 SPAG8Q99932 426 aaPredicted RBP9.84□□□□□ -0.83
VRK3-205ENST00000593919 ZNF256Q9Y2P7 627 aaPredicted RBP9.84□□□□□ -0.83
VRK3-205ENST00000593919 TRAV25A0A0B4J276 109 aa9.84□□□□□ -0.83
VRK3-205ENST00000593919 FABP5P3A8MUU1 101 aa9.84□□□□□ -0.83
VRK3-205ENST00000593919 EBLN2Q6P2I7 272 aa9.84□□□□□ -0.83
VRK3-205ENST00000593919 CHCHD1Q96BP2 118 aaKnown RBP9.84□□□□□ -0.83
VRK3-205ENST00000593919 LINC00477Q96M19 166 aa9.84□□□□□ -0.83
VRK3-205ENST00000593919 IGHV1-24A0A0C4DH33 117 aa9.83□□□□□ -0.84
VRK3-205ENST00000593919 IGLV1-51P01701 117 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms