RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CAV2P51636 162 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 VWC2Q2TAL6 325 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 CHAC2Q8WUX2 184 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 SLIRPQ9GZT3 109 aaKnown RBP8.31□□□□□ -1.08
SS18-219ENST00000581570 OR51M1Q9H341 326 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 RNF213Q63HN8 5207 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 FGF7P21781 194 aa8.3□□□□□ -1.08
SS18-219ENST00000581570 GCSAMLQ5JQS6 135 aa8.3□□□□□ -1.08
SS18-219ENST00000581570 MIR17HGQ75NE6 70 aa8.3□□□□□ -1.08
SS18-219ENST00000581570 RMI2Q96E14 147 aa8.3□□□□□ -1.08
SS18-219ENST00000581570 FAM167A-AS1Q96KT0 104 aa8.3□□□□□ -1.08
SS18-219ENST00000581570 LSM5Q9Y4Y9 91 aaKnown RBP8.3□□□□□ -1.08
SS18-219ENST00000581570 LENEPQ9Y5L5 61 aa8.3□□□□□ -1.08
SS18-219ENST00000581570 LRP2P98164 4655 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 IGHV3-73A0A0B4J1V6 119 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 CIDEAO60543 219 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 NDUFB6O95139 128 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 S100A11P31949 105 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 PHYHIPLQ96FC7 376 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 SH3BGRL3Q9H299 93 aa8.29□□□□□ -1.08
SS18-219ENST00000581570 IGKV2D-24A0A075B6R9 120 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 C5orf51A6NDU8 294 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 TYMSP04818 313 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 OR10J4P0C629 311 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 RANP62826 216 aaKnown RBP8.28□□□□□ -1.08
SS18-219ENST00000581570 CFAP126Q5VTH2 177 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 FXYD5Q96DB9 178 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 ATP5SQ99766 215 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 PAXXQ9BUH6 204 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 V9GYH0 126 aa8.28□□□□□ -1.08
SS18-219ENST00000581570 TRAV8-1A0A0A6YYK1 113 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 TRAV21A0A0B4J279 112 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 SULT1A1P50225 295 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 TMBIM6P55061 237 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 ZNF876PQ49A33 203 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 DPPA3Q6W0C5 159 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 MITD1Q8WV92 249 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 BCL7BQ9BQE9 202 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 MRPS26Q9BYN8 205 aaKnown RBP8.27□□□□□ -1.09
SS18-219ENST00000581570 C11orf1Q9H5F2 150 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 SDF2L1Q9HCN8 221 aa8.27□□□□□ -1.09
SS18-219ENST00000581570 NAP1L6A6NFF2 107 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 DIRC3C9JPN6 131 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 CCSO14618 274 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 PVALBP20472 110 aaPredicted RBP8.26□□□□□ -1.09
SS18-219ENST00000581570 HBG1P69891 147 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 HBG2P69892 147 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 ATP6V1FQ16864 119 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 KCNS1Q96KK3 526 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 DNAJC30Q96LL9 226 aa8.26□□□□□ -1.09
SS18-219ENST00000581570 IGSF23A1L1A6 192 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 FAM25EA8MYX2 175 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 MGST1P10620 155 aaKnown RBP8.25□□□□□ -1.09
SS18-219ENST00000581570 ASIPP42127 132 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 Q6ZRU5 148 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 TMEM252Q8N6L7 170 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 TMED6Q8WW62 240 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 NPCDR1Q9BY65 106 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 MRPL18Q9H0U6 180 aaKnown RBP8.25□□□□□ -1.09
SS18-219ENST00000581570 RPH3ALQ9UNE2 315 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 TNXBP22105 4242 aa8.25□□□□□ -1.09
SS18-219ENST00000581570 GAGE12JA6NER3 117 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 OR7C2O60412 319 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 SEC11BP0C7V7 166 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 INPP1P49441 399 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 GAGE1Q13065 139 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 GAGE4Q13068 117 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 GAGE5Q13069 117 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 GAGE13Q4V321 117 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 SPANXN2Q5MJ10 180 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 STX12Q86Y82 276 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 ASB13Q8WXK3 278 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 LYRM2Q9NU23 88 aaPredicted RBP8.24□□□□□ -1.09
SS18-219ENST00000581570 URGCP-MRPS24S4R325 110 aa8.24□□□□□ -1.09
SS18-219ENST00000581570 A0A087WWC5 75 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 F6UZH7 168 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 NOL3O60936 208 aaKnown RBP8.23□□□□□ -1.09
SS18-219ENST00000581570 C14orf177Q52M58 125 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 CYB561D1Q8N8Q1 229 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 UBE2WQ96B02 151 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 C2orf50Q96LR7 162 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 HYLS1Q96M11 299 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 KLK12Q9UKR0 248 aa8.23□□□□□ -1.09
SS18-219ENST00000581570 PGPEP1LA6NFU8 196 aa8.22□□□□□ -1.09
SS18-219ENST00000581570 H3BMQ9 156 aa8.22□□□□□ -1.09
SS18-219ENST00000581570 S100A5P33763 92 aa8.22□□□□□ -1.09
SS18-219ENST00000581570 S100A10P60903 97 aa8.22□□□□□ -1.09
SS18-219ENST00000581570 THAP6Q8TBB0 222 aa8.22□□□□□ -1.09
SS18-219ENST00000581570 TREM1Q9NP99 234 aa8.22□□□□□ -1.09
SS18-219ENST00000581570 LINC00694P0DN24 101 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 UBE2L3P68036 154 aaKnown RBP8.21□□□□□ -1.1
SS18-219ENST00000581570 ZNF506Q5JVG8 444 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 TRIQKQ629K1 86 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 NIT1Q86X76 327 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 CMTM2Q8TAZ6 248 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 PTH2Q96A98 100 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 TVP23CQ96ET8 276 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 NMES1Q9C002 83 aa8.21□□□□□ -1.1
SS18-219ENST00000581570 PGPA6NDG6 321 aa8.2□□□□□ -1.1
SS18-219ENST00000581570 CENPXA8MT69 81 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms