RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 GNRH2O43555 120 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 SH2D1AO60880 128 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 GNG4P50150 75 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 FAM159AQ6UWV7 190 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 TMEM263Q8WUH6 116 aaKnown RBP6.14□□□□□ -1.43
NUP88-211ENST00000575976 C16orf74Q96GX8 76 aa6.14□□□□□ -1.43
NUP88-211ENST00000575976 C11orf68Q9H3H3 251 aaKnown RBP6.14□□□□□ -1.43
NUP88-211ENST00000575976 IGKV3D-20A0A0C4DH25 116 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 TMEM189A5PLL7 270 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 C9JCJ5 164 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 TYMSP04818 313 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 MGST1P10620 155 aaKnown RBP6.13□□□□□ -1.43
NUP88-211ENST00000575976 TDRG1Q3Y452 100 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 FAM162BQ5T6X4 162 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 PRR27Q6MZM9 219 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 ZNF493Q6ZR52 646 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 C11orf72Q8NBR9 251 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 OCC1Q8TAD7 63 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 SMDT1Q9H4I9 107 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 GSN-AS1Q9NRJ2 163 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 CELA1Q9UNI1 258 aa6.13□□□□□ -1.43
NUP88-211ENST00000575976 TRGV11A0A075B6L2 103 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 CXorf65A6NEN9 183 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 ZNF727A8MUV8 499 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 M0R036 132 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 ORM1P02763 201 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 OR5I1Q13606 314 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 IBA57Q5T440 356 aaKnown RBP6.12□□□□□ -1.43
NUP88-211ENST00000575976 FAM222AQ5U5X8 452 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 IL17DQ8TAD2 202 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 C11orf45Q8TAV5 145 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 SMIM12Q96EX1 92 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 KCNS1Q96KK3 526 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 SMIM7Q9BQ49 75 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 SDF2L1Q9HCN8 221 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 NOP10Q9NPE3 64 aaKnown RBP6.12□□□□□ -1.43
NUP88-211ENST00000575976 MDFICQ9P1T7 246 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 DKK2Q9UBU2 259 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 RYR2Q92736 4967 aa6.12□□□□□ -1.43
NUP88-211ENST00000575976 TMSB15BA0A087X1C1 80 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 IGHV3-16A0A0C4DH30 117 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 C19orf71A6NCJ1 209 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 SNURFLB1AK76 121 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 B4DEV8 164 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 KRBOX1C9JBD0 128 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 K7EN84 100 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 SPART-AS1P0CW21 52 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 TCL1AP56279 114 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 NANOS2P60321 138 aaKnown RBP6.11□□□□□ -1.43
NUP88-211ENST00000575976 ZNF415Q09FC8 603 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 LINC01559Q495D7 138 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 ZNF575Q86XF7 245 aa6.11□□□□□ -1.43
NUP88-211ENST00000575976 TIMM8BQ9Y5J9 83 aaPredicted RBP6.11□□□□□ -1.43
NUP88-211ENST00000575976 GRIFINA4D1Z8 144 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 LINC00862A6NCI5 91 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 LYRM9A8MSI8 78 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 RPL19P84098 196 aaKnown RBP6.1□□□□□ -1.43
NUP88-211ENST00000575976 DAZ2Q13117 558 aaKnown RBP6.1□□□□□ -1.43
NUP88-211ENST00000575976 C21orf62-AS1Q17RA5 79 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 C12orf74Q32Q52 190 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 FAM74A3Q4VXF1 159 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 SOHLH1Q5JUK2 328 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 LINC01551Q86U37 167 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 COMMD7Q86VX2 200 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 NUDT10Q8NFP7 164 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 ANAPC16Q96DE5 110 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 DAZAP1Q96EP5 407 aaKnown RBP6.1□□□□□ -1.43
NUP88-211ENST00000575976 NUDT11Q96G61 164 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 BIN3Q9NQY0 253 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 LY96Q9Y6Y9 160 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 TENM2Q9NT68 2774 aa6.1□□□□□ -1.43
NUP88-211ENST00000575976 TEX48A0A1B0GUV7 120 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 GAGE12BA1L429 117 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 SPINK4O60575 86 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 GAGE7O76087 117 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 SFTA3P0C7M3 94 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 GAGE12FP0CL80 117 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 GAGE12GP0CL81 117 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 GAGE12IP0CL82 117 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 DEFB130BP0DP73 79 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 DEFB130AP0DP74 79 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 RNASE3P12724 160 aaKnown RBP6.09□□□□□ -1.43
NUP88-211ENST00000575976 RPL23P62829 140 aaKnown RBP6.09□□□□□ -1.43
NUP88-211ENST00000575976 TMEM241Q24JQ0 296 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 Q6ZTC4 211 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 Q6ZTI0 123 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 SPXQ9BT56 116 aa6.09□□□□□ -1.43
NUP88-211ENST00000575976 MRPL16Q9NX20 251 aaKnown RBP6.09□□□□□ -1.43
NUP88-211ENST00000575976 DYNC2H1Q8NCM8 4307 aaKnown RBP6.08□□□□□ -1.44
NUP88-211ENST00000575976 TRGV1A0A0A0MS02 117 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 LOC100996750A0A140TA64 210 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 P01737 135 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 ARMS2P0C7Q2 107 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 S100A4P26447 101 aaKnown RBP6.08□□□□□ -1.44
NUP88-211ENST00000575976 ASIPP42127 132 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 DAD1P61803 113 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 DNLZQ5SXM8 178 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 UQCC3Q6UW78 93 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 LINC00612Q8N6U2 182 aa6.08□□□□□ -1.44
NUP88-211ENST00000575976 OR2D3Q8NGH3 330 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms