RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 C5orf17Q8NAS9 161 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 C11orf72Q8NBR9 251 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 TREM1Q9NP99 234 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 NAGKQ9UJ70 344 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 MUC4Q99102 2169 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 HSPG2P98160 4391 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 IGLV2-18A0A075B6J9 118 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 TRAV26-1A0A087WT03 109 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 A0A0J9YY99 117 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 FBLL1A6NHQ2 334 aaKnown RBP5.68□□□□□ -1.5
VPS53-214ENST00000572607 M0R2N4 97 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 SPINK4O60575 86 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 PPT1P50897 306 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 GNG5P63218 68 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 LGALS9BQ3B8N2 356 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 SOHLH1Q5JUK2 328 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 MUC21Q5SSG8 566 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 Q6AWC8 147 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 STOML3Q8TAV4 291 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 C18orf15Q96N68 181 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 TMPRSS5Q9H3S3 457 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 KLF12Q9Y4X4 402 aa5.68□□□□□ -1.5
VPS53-214ENST00000572607 TRAV8-1A0A0A6YYK1 113 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 KANTRA0A1W2PQU2 76 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 A0A1W2PRE2 83 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 F6UZH7 168 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 H3BNG1 76 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 SMLR1H3BR10 107 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 IFNA7P01567 189 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 TCRAP04437 139 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 SUMO1P63165 101 aaKnown RBP5.67□□□□□ -1.5
VPS53-214ENST00000572607 EIF5AP63241 154 aaKnown RBP5.67□□□□□ -1.5
VPS53-214ENST00000572607 SLAQ13239 276 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 ZNF345Q14585 488 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 TMEM183BQ1AE95 376 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 LINC00336Q6ZUF6 198 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 SSX7Q7RTT5 188 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 TMEM183AQ8IXX5 376 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 CYB561D1Q8N8Q1 229 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 SUN5Q8TC36 379 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 KCNS1Q96KK3 526 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 SDF2L1Q9HCN8 221 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 MRPL16Q9NX20 251 aaKnown RBP5.67□□□□□ -1.5
VPS53-214ENST00000572607 TP53TG3Q9ULZ0 132 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 PSG8Q9UQ74 426 aa5.67□□□□□ -1.5
VPS53-214ENST00000572607 A0A0D9SG52 128 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 MAP1LC3B2A6NCE7 125 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 GGTLC3B5MD39 225 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 G3V3Q6 166 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 PFDN1O60925 122 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 SRSF3P84103 164 aaKnown RBP5.66□□□□□ -1.5
VPS53-214ENST00000572607 FLI1Q01543 452 aaPredicted RBP5.66□□□□□ -1.5
VPS53-214ENST00000572607 SAPCD1Q5SSQ6 148 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 Q6ZQT7 251 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 PRNTQ86SH4 94 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 KCNRGQ8N5I3 272 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 TMEM75Q8N9X5 138 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 SGK494Q96LW2 274 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 SPXQ9BT56 116 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 ZNF471Q9BX82 626 aaPredicted RBP5.66□□□□□ -1.5
VPS53-214ENST00000572607 NKX6-2Q9C056 277 aaPredicted RBP5.66□□□□□ -1.5
VPS53-214ENST00000572607 MAP1LC3BQ9GZQ8 125 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 EPDR1Q9UM22 224 aa5.66□□□□□ -1.5
VPS53-214ENST00000572607 TRGV4A0A0C4DH28 118 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 HMSDA8MTL9 139 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 BCL2L11O43521 198 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 GCGP01275 180 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 IGHV3-53P01767 116 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 FGF8P55075 233 aaPredicted RBP5.65□□□□□ -1.5
VPS53-214ENST00000572607 UBE2G2P60604 165 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 TDRG1Q3Y452 100 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 SMUG1Q53HV7 270 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 CYTL1Q9NRR1 136 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 MDFICQ9P1T7 246 aa5.65□□□□□ -1.5
VPS53-214ENST00000572607 UMAD1C9J7I0 102 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 M0R2P5 195 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 PEX7O00628 323 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 PFN1P07737 140 aaKnown RBP5.64□□□□□ -1.51
VPS53-214ENST00000572607 SEC11BP0C7V7 166 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 ZNF726P1Q15940 193 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 ZNRF2Q8NHG8 242 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 PCNPQ8WW12 178 aaKnown RBP5.64□□□□□ -1.51
VPS53-214ENST00000572607 HIST1H2BAQ96A08 127 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 TVP23CQ96ET8 276 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 PRO0255Q9UI72 69 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 HHLA3Q9XRX5 114 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 LINC00588Q9Y4M8 146 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 ICOSQ9Y6W8 199 aa5.64□□□□□ -1.51
VPS53-214ENST00000572607 IGHV3-16A0A0C4DH30 117 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 NBDYA0A0U1RRE5 68 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 PRSS29PA6NIE9 313 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 GNRH2O43555 120 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 TYMSP04818 313 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 TPT1P13693 172 aaKnown RBP5.63□□□□□ -1.51
VPS53-214ENST00000572607 UBE2G1P62253 170 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 TTC32Q5I0X7 151 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 C1orf134Q5TEV5 83 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 CST9LP1Q5W188 147 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 EIF5AL1Q6IS14 154 aaKnown RBP5.63□□□□□ -1.51
VPS53-214ENST00000572607 DPPA3Q6W0C5 159 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms