RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	TYMS	P04818	313 aa		12.84	□□□□□ -0.35
COMMD4-222	ENST00000568034	FAM222A	Q5U5X8	452 aa		12.84	□□□□□ -0.35
COMMD4-222	ENST00000568034	GNRH2	O43555	120 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	GNG4	P50150	75 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	NANOS2	P60321	138 aa	Known RBP	12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	IBA57	Q5T440	356 aa	Known RBP	12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	FAM162B	Q5T6X4	162 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	ZNF575	Q86XF7	245 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	C11orf45	Q8TAV5	145 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	SMIM12	Q96EX1	92 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	GSN-AS1	Q9NRJ2	163 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	MDFIC	Q9P1T7	246 aa		12.83	□□□□□ -0.36
COMMD4-222	ENST00000568034	PLEC	Q15149	4684 aa	Known RBP	12.82	□□□□□ -0.36
COMMD4-222	ENST00000568034	IGHV3-16	A0A0C4DH30	117 aa		12.82	□□□□□ -0.36
COMMD4-222	ENST00000568034	TCL1A	P56279	114 aa		12.82	□□□□□ -0.36
COMMD4-222	ENST00000568034	C12orf74	Q32Q52	190 aa		12.82	□□□□□ -0.36
COMMD4-222	ENST00000568034	NOP10	Q9NPE3	64 aa	Known RBP	12.82	□□□□□ -0.36
COMMD4-222	ENST00000568034	TRGV11	A0A075B6L2	103 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	CXorf65	A6NEN9	183 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	LYRM9	A8MSI8	78 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	SPART-AS1	P0CW21	52 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	CEBPG	P53567	150 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	DAZ2	Q13117	558 aa	Known RBP	12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	PEA15	Q15121	130 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	LINC01559	Q495D7	138 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	LINC00612	Q8N6U2	182 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	KCNS1	Q96KK3	526 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	SMDT1	Q9H4I9	107 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	SDF2L1	Q9HCN8	221 aa		12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	12.81	□□□□□ -0.36
COMMD4-222	ENST00000568034	CSMD3	Q7Z407	3707 aa		12.8	□□□□□ -0.36
COMMD4-222	ENST00000568034		K7EN84	100 aa		12.8	□□□□□ -0.36
COMMD4-222	ENST00000568034	ZNF415	Q09FC8	603 aa		12.8	□□□□□ -0.36
COMMD4-222	ENST00000568034	PRR27	Q6MZM9	219 aa		12.8	□□□□□ -0.36
COMMD4-222	ENST00000568034	MUC7	Q8TAX7	377 aa		12.8	□□□□□ -0.36
COMMD4-222	ENST00000568034	TEX48	A0A1B0GUV7	120 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034	C19orf71	A6NCJ1	209 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034	SNURFL	B1AK76	121 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034	KRBOX1	C9JBD0	128 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034		M0R036	132 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034	MGST1	P10620	155 aa	Known RBP	12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034		Q6ZTC4	211 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034	OCC1	Q8TAD7	63 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034	SMIM7	Q9BQ49	75 aa		12.79	□□□□□ -0.36
COMMD4-222	ENST00000568034		B4DEV8	164 aa		12.78	□□□□□ -0.36
COMMD4-222	ENST00000568034	SPINK4	O60575	86 aa		12.78	□□□□□ -0.36
COMMD4-222	ENST00000568034	ORM1	P02763	201 aa		12.78	□□□□□ -0.36
COMMD4-222	ENST00000568034	OR5I1	Q13606	314 aa		12.78	□□□□□ -0.36
COMMD4-222	ENST00000568034	ZNF727	A8MUV8	499 aa		12.77	□□□□□ -0.37
COMMD4-222	ENST00000568034	RNASE3	P12724	160 aa	Known RBP	12.77	□□□□□ -0.37
COMMD4-222	ENST00000568034	RPL19	P84098	196 aa	Known RBP	12.77	□□□□□ -0.37
COMMD4-222	ENST00000568034		Q6ZTI0	123 aa		12.77	□□□□□ -0.37
COMMD4-222	ENST00000568034	C9orf85	Q96MD7	179 aa		12.77	□□□□□ -0.37
COMMD4-222	ENST00000568034	LY96	Q9Y6Y9	160 aa		12.77	□□□□□ -0.37
COMMD4-222	ENST00000568034	NDUFA5	Q16718	116 aa		12.76	□□□□□ -0.37
COMMD4-222	ENST00000568034	DNLZ	Q5SXM8	178 aa		12.76	□□□□□ -0.37
COMMD4-222	ENST00000568034	TMSB15B	A0A087X1C1	80 aa		12.75	□□□□□ -0.37
COMMD4-222	ENST00000568034	DEFB130B	P0DP73	79 aa		12.75	□□□□□ -0.37
COMMD4-222	ENST00000568034	DEFB130A	P0DP74	79 aa		12.75	□□□□□ -0.37
COMMD4-222	ENST00000568034	DAD1	P61803	113 aa		12.75	□□□□□ -0.37
COMMD4-222	ENST00000568034	LINC01551	Q86U37	167 aa		12.75	□□□□□ -0.37
COMMD4-222	ENST00000568034	MRPL16	Q9NX20	251 aa	Known RBP	12.75	□□□□□ -0.37
COMMD4-222	ENST00000568034	MUC4	Q99102	2169 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	GRIFIN	A4D1Z8	144 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	CXCL1	P09341	107 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	FAM74A3	Q4VXF1	159 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	ZFAND6	Q6FIF0	208 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	PHLDA1	Q8WV24	401 aa	Predicted RBP	12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	SPX	Q9BT56	116 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	BIN3	Q9NQY0	253 aa		12.74	□□□□□ -0.37
COMMD4-222	ENST00000568034	TRGV1	A0A0A0MS02	117 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	GAGE12B	A1L429	117 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	LINC00862	A6NCI5	91 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	GAGE7	O76087	117 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	GAGE12F	P0CL80	117 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	GAGE12G	P0CL81	117 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	GAGE12I	P0CL82	117 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	ASIP	P42127	132 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	LGALS9B	Q3B8N2	356 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	NUDT10	Q8NFP7	164 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	NUDT11	Q96G61	164 aa		12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034	RNASE7	Q9H1E1	156 aa	Known RBP	12.73	□□□□□ -0.37
COMMD4-222	ENST00000568034		H3BVH4	76 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034		M0R2P5	195 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034	SOHLH1	Q5JUK2	328 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034	RASL10A	Q92737	203 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034	C18orf15	Q96N68	181 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034	SCRT2	Q9NQ03	307 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034	IL36B	Q9NZH7	164 aa		12.72	□□□□□ -0.37
COMMD4-222	ENST00000568034	C3orf84	H3BNL1	204 aa		12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	SFTA3	P0C7M3	94 aa		12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	S100A4	P26447	101 aa	Known RBP	12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	RPL23	P62829	140 aa	Known RBP	12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	TMEM241	Q24JQ0	296 aa		12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	COMMD7	Q86VX2	200 aa		12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	DAZAP1	Q96EP5	407 aa	Known RBP	12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	NAT8	Q9UHE5	227 aa		12.71	□□□□□ -0.37
COMMD4-222	ENST00000568034	TRAV10	A0A0B4J240	114 aa		12.7	□□□□□ -0.38
COMMD4-222	ENST00000568034		P01737	135 aa		12.7	□□□□□ -0.38
COMMD4-222	ENST00000568034	ARMS2	P0C7Q2	107 aa		12.7	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms