RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 GAGE12IP0CL82 117 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 TMEM183BQ1AE95 376 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 LGALS9CQ6DKI2 356 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 PRNTQ86SH4 94 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 TMEM183AQ8IXX5 376 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 ZNF680Q8NEM1 530 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 DERL1Q9BUN8 251 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 MRPL16Q9NX20 251 aaKnown RBP6.88□□□□□ -1.31
CLN3-220ENST00000566040 TRBV20OR9-2A0A075B6H5 130 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 RGS13O14921 159 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 LTAP01374 205 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 IGLV2-8P01709 118 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 RNASE3P12724 160 aaKnown RBP6.87□□□□□ -1.31
CLN3-220ENST00000566040 HTN3P15516 51 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 EIF5AP63241 154 aaKnown RBP6.87□□□□□ -1.31
CLN3-220ENST00000566040 ALKAL2Q6UX46 152 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 LYPD6BQ8NI32 183 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 HIST1H2BAQ96A08 127 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 C11orf52Q96A22 123 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 VSIG2Q96IQ7 327 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 C9orf85Q96MD7 179 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 MLST8Q9BVC4 326 aa6.87□□□□□ -1.31
CLN3-220ENST00000566040 TRAV21A0A0B4J279 112 aa6.86□□□□□ -1.31
CLN3-220ENST00000566040 IFNA7P01567 189 aa6.86□□□□□ -1.31
CLN3-220ENST00000566040 PFN1P07737 140 aaKnown RBP6.86□□□□□ -1.31
CLN3-220ENST00000566040 RAB5CP51148 216 aa6.86□□□□□ -1.31
CLN3-220ENST00000566040 TCTAP57738 103 aa6.86□□□□□ -1.31
CLN3-220ENST00000566040 NKX6-2Q9C056 277 aaPredicted RBP6.86□□□□□ -1.31
CLN3-220ENST00000566040 PKHD1P08F94 4074 aa6.86□□□□□ -1.31
CLN3-220ENST00000566040 TRGV1A0A0A0MS02 117 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 SNURFLB1AK76 121 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 LY6G6CO95867 125 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 ATP5G1P05496 136 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 ZNF415Q09FC8 603 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 ZNF674Q2M3X9 581 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 SMUG1Q53HV7 270 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 CST9LP1Q5W188 147 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 NHLRC2Q8NBF2 726 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 FMC1Q96HJ9 113 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 FAM210BQ96KR6 192 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 TCEAL7Q9BRU2 100 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 GNG13Q9P2W3 67 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 NAGKQ9UJ70 344 aa6.85□□□□□ -1.31
CLN3-220ENST00000566040 FBLL1A6NHQ2 334 aaKnown RBP6.84□□□□□ -1.31
CLN3-220ENST00000566040 F5H768 121 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 SH2D1AO60880 128 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 FHL2Q14192 279 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 LGALS9BQ3B8N2 356 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 RASL10AQ92737 203 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 ZNF479Q96JC4 524 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 NDUFAF3Q9BU61 184 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 MANBALQ9NQG1 85 aa6.84□□□□□ -1.31
CLN3-220ENST00000566040 TRGV11A0A075B6L2 103 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 TRAV26-1A0A087WT03 109 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 PGPEP1LA6NFU8 196 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 KRBOX1C9JBD0 128 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 K7EQM0 130 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 SFTA3P0C7M3 94 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 BCL2P10415 239 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 AKR1C3P42330 323 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 SAPCD1Q5SSQ6 148 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 DNLZQ5SXM8 178 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 FAM159AQ6UWV7 190 aa6.83□□□□□ -1.32
CLN3-220ENST00000566040 IGHV3-53P01767 116 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 RPL35P42766 123 aaKnown RBP6.82□□□□□ -1.32
CLN3-220ENST00000566040 RPL19P84098 196 aaKnown RBP6.82□□□□□ -1.32
CLN3-220ENST00000566040 MEF2BQ02080 365 aaPredicted RBP6.82□□□□□ -1.32
CLN3-220ENST00000566040 LINC01559Q495D7 138 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 EIF5AL1Q6IS14 154 aaKnown RBP6.82□□□□□ -1.32
CLN3-220ENST00000566040 UFSP1Q6NVU6 142 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 NDFIP1Q9BT67 221 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 SDF2L1Q9HCN8 221 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 ZFP30Q9Y2G7 519 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 BIRC6Q9NR09 4857 aa6.82□□□□□ -1.32
CLN3-220ENST00000566040 A0A096LPF7 62 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 A0A0J9YY99 117 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 RAB19A4D1S5 217 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 M0R2P5 195 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 PPT1P50897 306 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 ZNF506Q5JVG8 444 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 Q6ZR54 194 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 PCNPQ8WW12 178 aaKnown RBP6.81□□□□□ -1.32
CLN3-220ENST00000566040 PTH2Q96A98 100 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 SPXQ9BT56 116 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 SCRT2Q9NQ03 307 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 LINC00588Q9Y4M8 146 aa6.81□□□□□ -1.32
CLN3-220ENST00000566040 LOC100131303A0A0U1RQF7 123 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 C19orf71A6NCJ1 209 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 FABP5P3A8MUU1 101 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 H3BNG1 76 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 M0R036 132 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 RS1O15537 224 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 CRYBA4P53673 196 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 UBE2G1P62253 170 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 CENPWQ5EE01 88 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 CFAP126Q5VTH2 177 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 Q6ZSN1 163 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 C15orf53Q8NAA6 179 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 ZNRF2Q8NHG8 242 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 KCNS1Q96KK3 526 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms