RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 ESM1Q9NQ30 184 aa14.35□□□□□ -0.11
SMPD3-203ENST00000563226 PAM16Q9Y3D7 125 aa14.35□□□□□ -0.11
SMPD3-203ENST00000563226 LOC389332A0A1B0GUA5 103 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 H3BVH4 76 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 RNASE4P34096 147 aaKnown RBP14.34□□□□□ -0.11
SMPD3-203ENST00000563226 IFI27P40305 119 aaPredicted RBP14.34□□□□□ -0.11
SMPD3-203ENST00000563226 ADAMTSL5Q6ZMM2 481 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 C14orf144Q96I85 54 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 TRAV21A0A0B4J279 112 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 RAB4AP20338 218 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 DEFA6Q01524 100 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 APRG1Q8IVJ8 170 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 WFDC12Q8WWY7 111 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 DUX3Q96PT4 197 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 SIGLEC8Q9NYZ4 499 aa14.34□□□□□ -0.11
SMPD3-203ENST00000563226 NPYP01303 97 aa14.33□□□□□ -0.12
SMPD3-203ENST00000563226 CKS2P33552 79 aa14.33□□□□□ -0.12
SMPD3-203ENST00000563226 PSMG4Q5JS54 123 aa14.33□□□□□ -0.12
SMPD3-203ENST00000563226 PRSS3P2Q8NHM4 247 aa14.33□□□□□ -0.12
SMPD3-203ENST00000563226 FOXC2Q99958 501 aa14.33□□□□□ -0.12
SMPD3-203ENST00000563226 VAMP8Q9BV40 100 aa14.33□□□□□ -0.12
SMPD3-203ENST00000563226 K7EQG2 157 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 SPRY2O43597 315 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 SNAI2O43623 268 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 AP5S1Q9NUS5 200 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 TIMM8BQ9Y5J9 83 aaPredicted RBP14.32□□□□□ -0.12
SMPD3-203ENST00000563226 GCN1Q92616 2671 aaKnown RBP14.32□□□□□ -0.12
SMPD3-203ENST00000563226 OR5AL1P0C617 328 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 BTF3P20290 206 aaKnown RBP14.32□□□□□ -0.12
SMPD3-203ENST00000563226 ANXA2RQ3ZCQ2 193 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 KHDC1LQ5JSQ8 128 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 SAMD13Q5VXD3 122 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 ATOH7Q8N100 152 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 TEX29Q8N6K0 151 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 YAE1D1Q9NRH1 226 aa14.32□□□□□ -0.12
SMPD3-203ENST00000563226 NF1P21359 2839 aa14.31□□□□□ -0.12
SMPD3-203ENST00000563226 CD5LO43866 347 aa14.31□□□□□ -0.12
SMPD3-203ENST00000563226 LEPROTL1O95214 131 aa14.31□□□□□ -0.12
SMPD3-203ENST00000563226 EVI2AP22794 236 aa14.31□□□□□ -0.12
SMPD3-203ENST00000563226 FA2HQ7L5A8 372 aa14.31□□□□□ -0.12
SMPD3-203ENST00000563226 AGRNO00468 2067 aa14.31□□□□□ -0.12
SMPD3-203ENST00000563226 OR11H1Q8NG94 326 aa14.3□□□□□ -0.12
SMPD3-203ENST00000563226 NDUFAF3Q9BU61 184 aa14.3□□□□□ -0.12
SMPD3-203ENST00000563226 TRBV7-9A0A0J9YWB2 115 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 KLLNB2CW77 178 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 GATA1P15976 413 aaPredicted RBP14.29□□□□□ -0.12
SMPD3-203ENST00000563226 C4orf3Q8WVX3 66 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 TMEM70Q9BUB7 260 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 LINC01619G3V211 115 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 SPANXN1Q5VSR9 72 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 C20orf144Q9BQM9 153 aa14.29□□□□□ -0.12
SMPD3-203ENST00000563226 SORL1Q92673 2214 aa14.28□□□□□ -0.12
SMPD3-203ENST00000563226 IGHV4-4A0A075B6R2 117 aa14.28□□□□□ -0.12
SMPD3-203ENST00000563226 A0A096LNJ9 63 aa14.28□□□□□ -0.12
SMPD3-203ENST00000563226 GNRH2O43555 120 aa14.28□□□□□ -0.12
SMPD3-203ENST00000563226 MAJINQ3KP22 176 aa14.28□□□□□ -0.12
SMPD3-203ENST00000563226 A0A0J9YX75 114 aa14.27□□□□□ -0.12
SMPD3-203ENST00000563226 IGKV3-20P01619 116 aa14.27□□□□□ -0.12
SMPD3-203ENST00000563226 SNRPD3P62318 126 aaKnown RBP14.27□□□□□ -0.12
SMPD3-203ENST00000563226 KLHL30-AS1Q8NEE0 82 aa14.27□□□□□ -0.12
SMPD3-203ENST00000563226 FXYD7P58549 80 aa14.27□□□□□ -0.13
SMPD3-203ENST00000563226 FASNP49327 2511 aaKnown RBP14.27□□□□□ -0.13
SMPD3-203ENST00000563226 SYS1-DBNDD2H3BUS1 97 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 ASIPP42127 132 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 CACNG7P62955 275 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 SPATA45Q537H7 98 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 OR1N2Q8NGR9 330 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 TCF21O43680 179 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 DPF1Q92782 380 aa14.26□□□□□ -0.13
SMPD3-203ENST00000563226 TRAV26-2A0A0B4J265 109 aa14.25□□□□□ -0.13
SMPD3-203ENST00000563226 M0R381 172 aa14.25□□□□□ -0.13
SMPD3-203ENST00000563226 CRXO43186 299 aaPredicted RBP14.25□□□□□ -0.13
SMPD3-203ENST00000563226 TNFRSF6BO95407 300 aa14.25□□□□□ -0.13
SMPD3-203ENST00000563226 PPBPP02775 128 aa14.25□□□□□ -0.13
SMPD3-203ENST00000563226 S100A4P26447 101 aaKnown RBP14.25□□□□□ -0.13
SMPD3-203ENST00000563226 C11orf44Q8N8P7 122 aa14.25□□□□□ -0.13
SMPD3-203ENST00000563226 DLX4Q92988 240 aaPredicted RBP14.25□□□□□ -0.13
SMPD3-203ENST00000563226 MCRIP2Q9BUT9 160 aaKnown RBP14.25□□□□□ -0.13
SMPD3-203ENST00000563226 TRAV12-3A0A0B4J271 114 aa14.24□□□□□ -0.13
SMPD3-203ENST00000563226 RNASE3P12724 160 aaKnown RBP14.24□□□□□ -0.13
SMPD3-203ENST00000563226 OR9G4Q8NGQ1 327 aa14.24□□□□□ -0.13
SMPD3-203ENST00000563226 MUC4Q99102 2169 aa14.24□□□□□ -0.13
SMPD3-203ENST00000563226 SCRT2Q9NQ03 307 aa14.24□□□□□ -0.13
SMPD3-203ENST00000563226 TRAV12-2A0A075B6T6 113 aa14.23□□□□□ -0.13
SMPD3-203ENST00000563226 SMIM15Q7Z3B0 74 aa14.23□□□□□ -0.13
SMPD3-203ENST00000563226 ZNF747Q9BV97 191 aa14.23□□□□□ -0.13
SMPD3-203ENST00000563226 MAP1LC3AQ9H492 121 aa14.23□□□□□ -0.13
SMPD3-203ENST00000563226 HSPB8Q9UJY1 196 aa14.23□□□□□ -0.13
SMPD3-203ENST00000563226 MTORP42345 2549 aa14.23□□□□□ -0.13
SMPD3-203ENST00000563226 H0Y8G0 127 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 ODF3Q96PU9 254 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 SMR3AQ99954 134 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 MIEN1Q9BRT3 115 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 MAP1LC3CQ9BXW4 147 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 PHLDA3Q9Y5J5 127 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 HECTD1Q9ULT8 2610 aa14.22□□□□□ -0.13
SMPD3-203ENST00000563226 C7orf71A4D174 169 aa14.21□□□□□ -0.13
SMPD3-203ENST00000563226 LEPP41159 167 aa14.21□□□□□ -0.13
SMPD3-203ENST00000563226 NRACQ8N912 160 aa14.21□□□□□ -0.13
SMPD3-203ENST00000563226 LAMTOR2Q9Y2Q5 125 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms