RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 DMRTA1Q5VZB9 504 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 EIF4E3Q8N5X7 224 aaKnown RBP7.07□□□□□ -1.28
VPS39-205ENST00000562258 OR11H2Q8NH07 326 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 RPL36ALQ969Q0 106 aaKnown RBP7.07□□□□□ -1.28
VPS39-205ENST00000562258 LEPROTL1O95214 131 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 C16orf54Q6UWD8 224 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 TSKUQ8WUA8 353 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 ST20Q9HBF5 79 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 PFN1P07737 140 aaKnown RBP7.06□□□□□ -1.28
VPS39-205ENST00000562258 COTL1Q14019 142 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 Q6AWC8 147 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 FOXI2Q6ZQN5 318 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 FAM19A2Q8N3H0 131 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 TMEM101Q96IK0 257 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 FAM110AQ9BQ89 295 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 WFDC10AQ9H1F0 79 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 CRXO43186 299 aaPredicted RBP7.06□□□□□ -1.28
VPS39-205ENST00000562258 PAX2Q02962 417 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 IZUMO1RA6ND01 250 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 F2Z2F3 143 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 CRYGBP07316 175 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 PTTG1IPP53801 180 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 ELOBQ15370 118 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 Q8N6K4 173 aa7.06□□□□□ -1.28
VPS39-205ENST00000562258 IGHV3-38A0A0C4DH36 116 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 TMEM213A2RRL7 107 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 PRSS2P07478 247 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 P0C879 139 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 PSMB8P28062 276 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 TMEM89A2RUT3 159 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 SMAGPQ0VAQ4 97 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 TMEM170BQ5T4T1 132 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 AMN1Q8IY45 258 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 IGF2BP2-AS1Q96M15 143 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 DMRT1Q9Y5R6 373 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 TMEM14CQ9P0S9 112 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 POLR3KQ9Y2Y1 108 aaPredicted RBP7.05□□□□□ -1.28
VPS39-205ENST00000562258 MUC4Q99102 2169 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 K7EMT4 169 aa7.05□□□□□ -1.28
VPS39-205ENST00000562258 AGRNO00468 2067 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 IGKV1D-37A0A075B6S9 117 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 NMUP48645 174 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 EIF4EBP1Q13541 118 aaPredicted RBP7.04□□□□□ -1.28
VPS39-205ENST00000562258 DEFB114Q30KQ6 69 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 ZC2HC1AQ96GY0 325 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 SCGB3A1Q96QR1 104 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 CRPP02741 224 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 AMBPP02760 352 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 IQCJQ1A5X6 159 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 ATOH7Q8N100 152 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 NUP35Q8NFH5 326 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 VAMP8Q9BV40 100 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 TMEM191AQ9H0A3 160 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 HSPB8Q9UJY1 196 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 LRBAP50851 2863 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 INSL3P51460 131 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 PMCHL2Q9BQD1 86 aa7.04□□□□□ -1.28
VPS39-205ENST00000562258 PSCAO43653 123 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 Q1RN00 199 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 OR10AG1Q8NH19 301 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 U3KQE9 123 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 D6R8Y8 96 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 ZNRF2Q8NHG8 242 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 MIEN1Q9BRT3 115 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 TMEM160Q9NX00 188 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 HERVK_113P61574 105 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 LINC00518Q8N0U6 118 aa7.03□□□□□ -1.28
VPS39-205ENST00000562258 CRYBG3Q68DQ2 2970 aa7.02□□□□□ -1.28
VPS39-205ENST00000562258 SMIM6P0DI80 62 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 EGR2P11161 476 aaPredicted RBP7.02□□□□□ -1.29
VPS39-205ENST00000562258 PAM16Q9Y3D7 125 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 WI2-2373I1.2A0A1W2PRP0 233 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 PPP1R17O96001 155 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 EDN2P20800 178 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 CACNG7P62955 275 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 SRSF9Q13242 221 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS39-205ENST00000562258 FAM167A-AS1Q96KT0 104 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 DPH3P1Q9H4G8 78 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 CARHSP1Q9Y2V2 147 aaKnown RBP7.02□□□□□ -1.29
VPS39-205ENST00000562258 NSD1Q96L73 2696 aaPredicted RBP7.02□□□□□ -1.29
VPS39-205ENST00000562258 A0A0U1RRA0 63 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 VWC2Q2TAL6 325 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 ZNF492Q9P255 531 aa7.02□□□□□ -1.29
VPS39-205ENST00000562258 NEGR1Q7Z3B1 354 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 MAP6D1Q9H9H5 199 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 TRAV26-2A0A0B4J265 109 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 INS-IGF2F8WCM5 200 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 PAX4O43316 350 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 PMCHL1Q16048 86 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 VCX2Q9H322 139 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 UTP20O75691 2785 aaKnown RBP7.01□□□□□ -1.29
VPS39-205ENST00000562258 C11orf68Q9H3H3 251 aaKnown RBP7.01□□□□□ -1.29
VPS39-205ENST00000562258 ADARB2-AS1A8MUL3 147 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 PYGO2Q9BRQ0 406 aa7.01□□□□□ -1.29
VPS39-205ENST00000562258 DCHS1Q96JQ0 3298 aa7□□□□□ -1.29
VPS39-205ENST00000562258 TRAV13-1A0A0B4J241 112 aa7□□□□□ -1.29
VPS39-205ENST00000562258 MALP21145 153 aa7□□□□□ -1.29
VPS39-205ENST00000562258 IFI27P40305 119 aaPredicted RBP7□□□□□ -1.29
VPS39-205ENST00000562258 MEIG1Q5JSS6 88 aa7□□□□□ -1.29
VPS39-205ENST00000562258 PAPPA-AS1Q5QFB9 102 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms