RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 UQCC1Q9NVA1 299 aa2.23□□□□□ -2.05
SMG1-204ENST00000561940 FAM32AQ9Y421 112 aaKnown RBP2.23□□□□□ -2.05
SMG1-204ENST00000561940 MED12LQ86YW9 2145 aa2.23□□□□□ -2.05
SMG1-204ENST00000561940 A0A0D9SG52 128 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 ZNF682O95780 498 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 CST2P09228 141 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 PPP1R2P41236 205 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 AKR1C3P42330 323 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 MAGEA12P43365 314 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 YPEL3P61236 119 aaPredicted RBP2.22□□□□□ -2.05
SMG1-204ENST00000561940 ELOBQ15370 118 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 DEFB112Q30KQ8 113 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 PPP1R2P3Q6NXS1 205 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 C9orf163Q8N9P6 203 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 CEP19Q96LK0 163 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 MCEEQ96PE7 176 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 TVP23BQ9NYZ1 205 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 BAIAP2Q9UQB8 552 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 ERGIC3Q9Y282 383 aa2.22□□□□□ -2.05
SMG1-204ENST00000561940 EXPH5Q8NEV8 1989 aa2.21□□□□□ -2.05
SMG1-204ENST00000561940 HERC1Q15751 4861 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 LYNX1G3V0Z9 82 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 LYZL6O75951 148 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 LY6G6CO95867 125 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 TCL1BO95988 128 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 PMP2P02689 132 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 HTR1AP08908 422 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 LYNX1P0DP58 116 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 G6PCP35575 357 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 CCSMST1Q4G0I0 132 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 C7orf65Q6ZTY9 151 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 CLVS1Q8IUQ0 354 aaPredicted RBP2.21□□□□□ -2.06
SMG1-204ENST00000561940 HIST3H2BBQ8N257 126 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 LINC00471Q8N535 108 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 ZNF439Q8NDP4 499 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 TERB2Q8NHR7 220 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 PFN4Q8NHR9 129 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 SKA2Q8WVK7 121 aaPredicted RBP2.21□□□□□ -2.06
SMG1-204ENST00000561940 MBD3L1Q8WWY6 194 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 PAIP2Q9BPZ3 127 aaKnown RBP2.21□□□□□ -2.06
SMG1-204ENST00000561940 YIPF3Q9GZM5 350 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 RNASE7Q9H1E1 156 aaKnown RBP2.21□□□□□ -2.06
SMG1-204ENST00000561940 DYNLRB1Q9NP97 96 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 ENY2Q9NPA8 101 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 CRCT1Q9UGL9 99 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 CYSLTR1Q9Y271 337 aa2.21□□□□□ -2.06
SMG1-204ENST00000561940 TRGV2A0A075B6R0 118 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 FUOMA2VDF0 154 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 ATP6V1G2-DDX39BF2Z307 99 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 MFSD11O43934 449 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 ZNF705BP0CI00 300 aaPredicted RBP2.2□□□□□ -2.06
SMG1-204ENST00000561940 ERP29P30040 261 aaKnown RBP2.2□□□□□ -2.06
SMG1-204ENST00000561940 PSPHP78330 225 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 ZNF345Q14585 488 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 ARHGAP11BQ3KRB8 267 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 NCBP2-AS2Q69YL0 99 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 SBSPONQ8IVN8 264 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 Q96M85 177 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 PARVBQ9HBI1 364 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 OPTCQ9UBM4 332 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 ARFGEF3Q5TH69 2177 aa2.2□□□□□ -2.06
SMG1-204ENST00000561940 M0R233 179 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 GPX2P18283 190 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 CDC42P60953 191 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 KHDC3LQ587J8 217 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 FAM173BQ6P4H8 233 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 Q6Q795 121 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 LCN15Q6UWW0 184 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 C12orf45Q8N5I9 185 aaPredicted RBP2.19□□□□□ -2.06
SMG1-204ENST00000561940 OR10X1Q8NGY0 326 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 ZNF563Q8TA94 476 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 C9orf16Q9BUW7 83 aa2.19□□□□□ -2.06
SMG1-204ENST00000561940 CMYA5Q8N3K9 4069 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 ABCA13Q86UQ4 5058 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 FAM159BA6NKW6 160 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 IBA57-AS1B1ANH7 110 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 BUB1B-PAK6H3BSN5 160 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 OR1I1O60431 355 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 SMIM17P0DL12 118 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 NEFHP12036 1026 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 LYRM7Q5U5X0 104 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 PXT1Q8NFP0 134 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 OR11H6Q8NGC7 330 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 OR4D11Q8NGI4 311 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 CDC26Q8NHZ8 85 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 MIXL1Q9H2W2 232 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 IL20Q9NYY1 176 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 SOX21Q9Y651 276 aaPredicted RBP2.18□□□□□ -2.06
SMG1-204ENST00000561940 DOCK11Q5JSL3 2073 aa2.18□□□□□ -2.06
SMG1-204ENST00000561940 SNRNP200O75643 2136 aaKnown RBP2.17□□□□□ -2.06
SMG1-204ENST00000561940 TRAPPC13A5PLN9 417 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 CLDN25C9JDP6 229 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 CRPP02741 224 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 RPSAP08865 295 aaKnown RBP2.17□□□□□ -2.06
SMG1-204ENST00000561940 RPS3P23396 243 aaKnown RBP eCLIP2.17□□□□□ -2.06
SMG1-204ENST00000561940 OR5A1Q8NGJ0 315 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 SLC25A40Q8TBP6 338 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 GPR146Q96CH1 333 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 AIF1LQ9BQI0 150 aa2.17□□□□□ -2.06
SMG1-204ENST00000561940 MRPL32Q9BYC8 188 aaKnown RBP2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms