RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 A0A1W2PPV4 95 aa12.9□□□□□ -0.34
VPS35-202ENST00000561713 SLAQ13239 276 aa12.9□□□□□ -0.34
VPS35-202ENST00000561713 Q5VSD8 79 aa12.9□□□□□ -0.34
VPS35-202ENST00000561713 PQLC2Q6ZP29 291 aa12.9□□□□□ -0.34
VPS35-202ENST00000561713 OR10G9Q8NGN4 311 aa12.9□□□□□ -0.34
VPS35-202ENST00000561713 OR10G7Q8NGN6 311 aa12.9□□□□□ -0.34
VPS35-202ENST00000561713 PCNPQ8WW12 178 aaKnown RBP12.9□□□□□ -0.34
VPS35-202ENST00000561713 CDC34P49427 236 aaPredicted RBP12.89□□□□□ -0.35
VPS35-202ENST00000561713 FAM74A1Q5RGS3 127 aa12.89□□□□□ -0.35
VPS35-202ENST00000561713 TMED6Q8WW62 240 aa12.89□□□□□ -0.35
VPS35-202ENST00000561713 RASL10AQ92737 203 aa12.89□□□□□ -0.35
VPS35-202ENST00000561713 SPXQ9BT56 116 aa12.89□□□□□ -0.35
VPS35-202ENST00000561713 TREM1Q9NP99 234 aa12.89□□□□□ -0.35
VPS35-202ENST00000561713 TRAV4A0A0B4J268 109 aa12.88□□□□□ -0.35
VPS35-202ENST00000561713 TDRG1Q3Y452 100 aa12.88□□□□□ -0.35
VPS35-202ENST00000561713 TRAV21A0A0B4J279 112 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 M0R2P5 195 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 ERVFC1-1P60608 527 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 TMEM75Q8N9X5 138 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 OR4C5Q8NGB2 326 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 SH3BGRL3Q9H299 93 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 LY96Q9Y6Y9 160 aa12.87□□□□□ -0.35
VPS35-202ENST00000561713 EREGO14944 169 aa12.86□□□□□ -0.35
VPS35-202ENST00000561713 ZNF80P51504 273 aaPredicted RBP12.86□□□□□ -0.35
VPS35-202ENST00000561713 KRTAP10-1P60331 282 aa12.86□□□□□ -0.35
VPS35-202ENST00000561713 CDPF1Q6NVV7 123 aa12.86□□□□□ -0.35
VPS35-202ENST00000561713 FRZBQ92765 325 aa12.86□□□□□ -0.35
VPS35-202ENST00000561713 SDF2L1Q9HCN8 221 aa12.86□□□□□ -0.35
VPS35-202ENST00000561713 C11orf21Q9P2W6 132 aa12.86□□□□□ -0.35
VPS35-202ENST00000561713 C9JCJ5 164 aa12.85□□□□□ -0.35
VPS35-202ENST00000561713 ATP6V0CP27449 155 aa12.85□□□□□ -0.35
VPS35-202ENST00000561713 IQCF2Q8IXL9 164 aa12.85□□□□□ -0.35
VPS35-202ENST00000561713 NHLRC2Q8NBF2 726 aa12.85□□□□□ -0.35
VPS35-202ENST00000561713 ASB13Q8WXK3 278 aa12.85□□□□□ -0.35
VPS35-202ENST00000561713 ORM1P02763 201 aa12.84□□□□□ -0.35
VPS35-202ENST00000561713 STAG3L2P0CL84 134 aa12.84□□□□□ -0.35
VPS35-202ENST00000561713 STAG3L3P0CL85 134 aa12.84□□□□□ -0.35
VPS35-202ENST00000561713 GCHFRP30047 84 aa12.84□□□□□ -0.35
VPS35-202ENST00000561713 RAB24Q969Q5 203 aa12.84□□□□□ -0.35
VPS35-202ENST00000561713 FLG2Q5D862 2391 aaPredicted RBP12.83□□□□□ -0.36
VPS35-202ENST00000561713 GGTLC3B5MD39 225 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 SMR3BP02814 79 aaPredicted RBP12.83□□□□□ -0.36
VPS35-202ENST00000561713 TCRAP04437 139 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 Q5BKY6 102 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 DPPA3Q6W0C5 159 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 C5orf17Q8NAS9 161 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 OR2G3Q8NGZ4 309 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 TXNDC17Q9BRA2 123 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 NDFIP1Q9BT67 221 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 MSRB1Q9NZV6 116 aa12.83□□□□□ -0.36
VPS35-202ENST00000561713 A0A087WTM6 91 aa12.82□□□□□ -0.36
VPS35-202ENST00000561713 IGHV3-73A0A0B4J1V6 119 aa12.82□□□□□ -0.36
VPS35-202ENST00000561713 GATA1P15976 413 aaPredicted RBP12.82□□□□□ -0.36
VPS35-202ENST00000561713 GCGP01275 180 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 CRYGDP07320 174 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 EVI2AP22794 236 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 PPT1P50897 306 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 PRNTQ86SH4 94 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 AQP10Q96PS8 301 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 PSMG3Q9BT73 122 aaPredicted RBP12.81□□□□□ -0.36
VPS35-202ENST00000561713 MED28Q9H204 178 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 PSG8Q9UQ74 426 aa12.81□□□□□ -0.36
VPS35-202ENST00000561713 FBLL1A6NHQ2 334 aaKnown RBP12.8□□□□□ -0.36
VPS35-202ENST00000561713 IGLV2-11P01706 119 aa12.8□□□□□ -0.36
VPS35-202ENST00000561713 ZNF876PQ49A33 203 aa12.8□□□□□ -0.36
VPS35-202ENST00000561713 NFE4Q86UQ8 179 aa12.8□□□□□ -0.36
VPS35-202ENST00000561713 ARL6IP6Q8N6S5 226 aa12.8□□□□□ -0.36
VPS35-202ENST00000561713 KCNS1Q96KK3 526 aa12.8□□□□□ -0.36
VPS35-202ENST00000561713 TRAV9-2A0A087WT02 112 aa12.79□□□□□ -0.36
VPS35-202ENST00000561713 CFAP126Q5VTH2 177 aa12.79□□□□□ -0.36
VPS35-202ENST00000561713 PTTG1O95997 202 aa12.78□□□□□ -0.36
VPS35-202ENST00000561713 SUMO1P63165 101 aaKnown RBP12.78□□□□□ -0.36
VPS35-202ENST00000561713 HAMPP81172 84 aa12.78□□□□□ -0.36
VPS35-202ENST00000561713 FLI1Q01543 452 aaPredicted RBP12.78□□□□□ -0.36
VPS35-202ENST00000561713 ZNF506Q5JVG8 444 aa12.78□□□□□ -0.36
VPS35-202ENST00000561713 RPL7L1Q6DKI1 246 aaKnown RBP12.78□□□□□ -0.36
VPS35-202ENST00000561713 SLC25A29Q8N8R3 303 aa12.78□□□□□ -0.36
VPS35-202ENST00000561713 SUN5Q8TC36 379 aa12.78□□□□□ -0.36
VPS35-202ENST00000561713 C9orf85Q96MD7 179 aa12.78□□□□□ -0.36
VPS35-202ENST00000561713 FXYD6-FXYD2A0A087WZ82 144 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 TRAV34A0A0B4J273 112 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 SERTM2A0A1B0GWG4 89 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 RNF222A6NCQ9 220 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 RS1O15537 224 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 ZFP69Q49AA0 526 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 CYB561D1Q8N8Q1 229 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 LINC00479Q96M42 142 aa12.77□□□□□ -0.37
VPS35-202ENST00000561713 PGPEP1LA6NFU8 196 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 K7EQM0 130 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 CXorf1O96002 111 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 PFN1P07737 140 aaKnown RBP12.76□□□□□ -0.37
VPS35-202ENST00000561713 ZNF726P1Q15940 193 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 SMUG1Q53HV7 270 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 ACTR3CQ9C0K3 210 aaPredicted RBP12.76□□□□□ -0.37
VPS35-202ENST00000561713 Q9HAA7 133 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 TMEM167BQ9NRX6 74 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 EPDR1Q9UM22 224 aa12.76□□□□□ -0.37
VPS35-202ENST00000561713 IGHV3-38A0A0C4DH36 116 aa12.75□□□□□ -0.37
VPS35-202ENST00000561713 TAAR5O14804 337 aa12.75□□□□□ -0.37
VPS35-202ENST00000561713 IGHV3-30P01768 117 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms