RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 SNRPD3P62318 126 aaKnown RBP4.28□□□□□ -1.72
LRRC28-220ENST00000561253 KHDC3LQ587J8 217 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 KRTAP7-1Q8IUC3 87 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 RNASE8Q8TDE3 154 aaKnown RBP4.28□□□□□ -1.72
LRRC28-220ENST00000561253 MBD3L1Q8WWY6 194 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 MRPL53Q96EL3 112 aaKnown RBP4.28□□□□□ -1.72
LRRC28-220ENST00000561253 FAM19A4Q96LR4 140 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 VGLL1Q99990 258 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 SLC50A1Q9BRV3 221 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 PARLQ9H300 379 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 OR51M1Q9H341 326 aa4.28□□□□□ -1.72
LRRC28-220ENST00000561253 LOC102724200A0A096LPH7 203 aaPredicted RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 TRAV1-1A0A0B4J248 108 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 IGHV3-38A0A0C4DH36 116 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 GGTLC3B5MD39 225 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 UMAD1C9J7I0 102 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 CRXO43186 299 aaPredicted RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 OR7C2O60412 319 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 PFDN1O60925 122 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 PRB4P10163 310 aaPredicted RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 ID1P41134 155 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 SULT1A2P50226 295 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 CNN1P51911 297 aaKnown RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 TAS2R45P59539 299 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 UBE2L3P68036 154 aaKnown RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 DEFB121Q5J5C9 76 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 ACTL10Q5JWF8 245 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 LYPD1Q8N2G4 141 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 EXOC3-AS1Q8N2X6 119 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 OR8A1Q8NGG7 326 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 RPUSD4Q96CM3 377 aaKnown RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 LINC00052Q96N35 136 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 ACTR3CQ9C0K3 210 aaPredicted RBP4.27□□□□□ -1.73
LRRC28-220ENST00000561253 CLEC5AQ9NY25 188 aa4.27□□□□□ -1.73
LRRC28-220ENST00000561253 ALMS1Q8TCU4 4167 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 MAP1LC3B2A6NCE7 125 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 ATP6V1G1O75348 118 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 ZNF705DP0CH99 300 aaPredicted RBP4.26□□□□□ -1.73
LRRC28-220ENST00000561253 ZNF705BP0CI00 300 aaPredicted RBP4.26□□□□□ -1.73
LRRC28-220ENST00000561253 CT45A10P0DMU9 189 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 EIF5AP63241 154 aaKnown RBP4.26□□□□□ -1.73
LRRC28-220ENST00000561253 FAM74A1Q5RGS3 127 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 AKR1C8PQ5T2L2 129 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 DPPA3Q6W0C5 159 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 STHQ8IWL8 128 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 ARL6IP6Q8N6S5 226 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 ZNF738Q8NE65 137 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 LYPD6BQ8NI32 183 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 BLNKQ8WV28 456 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 MAP1LC3BQ9GZQ8 125 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 SLC35B3Q9H1N7 401 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 Q9H3A6 140 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 TUBA4BQ9H853 241 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 RETNQ9HD89 108 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 TP53TG1Q9Y2A0 90 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 YTHDF2Q9Y5A9 579 aaKnown RBP4.26□□□□□ -1.73
LRRC28-220ENST00000561253 KMT2AQ03164 3969 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 DNAH6Q9C0G6 4158 aa4.26□□□□□ -1.73
LRRC28-220ENST00000561253 A0A1W2PPV4 95 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 A0A1W2PRE2 83 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 ZNF705EA8MWA4 302 aaPredicted RBP4.25□□□□□ -1.73
LRRC28-220ENST00000561253 CXorf1O96002 111 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 RBMY1A1P0DJD3 496 aaKnown RBP4.25□□□□□ -1.73
LRRC28-220ENST00000561253 RBMY1CP0DJD4 496 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 RAB5CP51148 216 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 FGF8P55075 233 aaPredicted RBP4.25□□□□□ -1.73
LRRC28-220ENST00000561253 RANP62826 216 aaKnown RBP4.25□□□□□ -1.73
LRRC28-220ENST00000561253 CCL20P78556 96 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 PSG9Q00887 426 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 RBMY1FQ15415 496 aaKnown RBP4.25□□□□□ -1.73
LRRC28-220ENST00000561253 ZNF705AQ6ZN79 300 aaPredicted RBP4.25□□□□□ -1.73
LRRC28-220ENST00000561253 ZFAND2AQ8N6M9 145 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 FAM213BQ8TBF2 198 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 TVP23CQ96ET8 276 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 ODF3Q96PU9 254 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 AGPAT4-IT1Q9H0P7 198 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 OTORQ9NRC9 128 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 TMEM167BQ9NRX6 74 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 PRELID1Q9Y255 219 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 ARL2-SNX15V9GYD0 113 aa4.25□□□□□ -1.73
LRRC28-220ENST00000561253 RYR3Q15413 4870 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 IGLV4-3A0A075B6K6 122 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 IGKV2-40A0A087WW87 121 aaPredicted RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 RBAKDNA6NC62 111 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 PGPA6NDG6 321 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 FAM74A7A6NL05 159 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 KLLNB2CW77 178 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 M0R2Z0 102 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 DUSP14O95147 198 aaKnown RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 CA1P00915 261 aaPredicted RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 IGKV2D-40P01614 121 aaPredicted RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 SLC25A5P05141 298 aaKnown RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 CRISP2P16562 243 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 APOC4P55056 127 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 HIST1H1AQ02539 215 aaPredicted RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 ERCC8Q13216 396 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 DEFB135Q30KP9 77 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 EIF5AL1Q6IS14 154 aaKnown RBP4.24□□□□□ -1.73
LRRC28-220ENST00000561253 EBLN2Q6P2I7 272 aa4.24□□□□□ -1.73
LRRC28-220ENST00000561253 MORN3Q6PF18 240 aaPredicted RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms