RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 HMGB3O15347 200 aaKnown RBP11.02□□□□□ -0.65
SNX1-213ENST00000561026 OR4C5Q8NGB2 326 aa11.02□□□□□ -0.65
SNX1-213ENST00000561026 C9JCJ5 164 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 F6UZH7 168 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 EREGO14944 169 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 ERVFC1-1P60608 527 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 GNG5P63218 68 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 WFDC10BQ8IUB3 73 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 TXNDC17Q9BRA2 123 aa11.01□□□□□ -0.65
SNX1-213ENST00000561026 TYMSP04818 313 aa11□□□□□ -0.65
SNX1-213ENST00000561026 DNAH10OSP0CZ25 163 aa11□□□□□ -0.65
SNX1-213ENST00000561026 ARL14EPLP0DKL9 152 aa11□□□□□ -0.65
SNX1-213ENST00000561026 KCNS1Q96KK3 526 aa11□□□□□ -0.65
SNX1-213ENST00000561026 SDF2L1Q9HCN8 221 aa11□□□□□ -0.65
SNX1-213ENST00000561026 MSRB1Q9NZV6 116 aa11□□□□□ -0.65
SNX1-213ENST00000561026 EVI2AP22794 236 aa10.99□□□□□ -0.65
SNX1-213ENST00000561026 FUSP35637 526 aaKnown RBP eCLIP10.99□□□□□ -0.65
SNX1-213ENST00000561026 CDC34P49427 236 aaPredicted RBP10.99□□□□□ -0.65
SNX1-213ENST00000561026 CDPF1Q6NVV7 123 aa10.99□□□□□ -0.65
SNX1-213ENST00000561026 OR2G3Q8NGZ4 309 aa10.99□□□□□ -0.65
SNX1-213ENST00000561026 SGK494Q96LW2 274 aa10.99□□□□□ -0.65
SNX1-213ENST00000561026 ALG5Q9Y673 324 aa10.99□□□□□ -0.65
SNX1-213ENST00000561026 A0A087WTM6 91 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 LOC100131303A0A0U1RQF7 123 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 SERTM2A0A1B0GWG4 89 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 STAG3L2P0CL84 134 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 STAG3L3P0CL85 134 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 SH2D6Q7Z4S9 175 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 HSD17B11Q8NBQ5 300 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 SUN5Q8TC36 379 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 ASB13Q8WXK3 278 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 RAB24Q969Q5 203 aa10.98□□□□□ -0.65
SNX1-213ENST00000561026 TCRAP04437 139 aa10.97□□□□□ -0.65
SNX1-213ENST00000561026 GATA1P15976 413 aaPredicted RBP10.97□□□□□ -0.65
SNX1-213ENST00000561026 C5orf17Q8NAS9 161 aa10.97□□□□□ -0.65
SNX1-213ENST00000561026 NDFIP1Q9BT67 221 aa10.97□□□□□ -0.65
SNX1-213ENST00000561026 PSMG3Q9BT73 122 aaPredicted RBP10.97□□□□□ -0.65
SNX1-213ENST00000561026 GCHFRP30047 84 aa10.96□□□□□ -0.65
SNX1-213ENST00000561026 ZNF80P51504 273 aaPredicted RBP10.96□□□□□ -0.65
SNX1-213ENST00000561026 TIRAPP58753 221 aa10.96□□□□□ -0.65
SNX1-213ENST00000561026 ZNF876PQ49A33 203 aa10.96□□□□□ -0.65
SNX1-213ENST00000561026 AQP10Q96PS8 301 aa10.96□□□□□ -0.65
SNX1-213ENST00000561026 K7EQM0 130 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 TAAR5O14804 337 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 MBP02144 154 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 CRYGDP07320 174 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 ATP6V0CP27449 155 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 SERF2P84101 59 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 C10orf126Q8N4M7 172 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 NHLRC2Q8NBF2 726 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 C11orf21Q9P2W6 132 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 PSG8Q9UQ74 426 aa10.95□□□□□ -0.66
SNX1-213ENST00000561026 FBLL1A6NHQ2 334 aaKnown RBP10.94□□□□□ -0.66
SNX1-213ENST00000561026 IGLV2-11P01706 119 aa10.94□□□□□ -0.66
SNX1-213ENST00000561026 PFN1P07737 140 aaKnown RBP10.94□□□□□ -0.66
SNX1-213ENST00000561026 SUMO1P63165 101 aaKnown RBP10.94□□□□□ -0.66
SNX1-213ENST00000561026 SLC25A29Q8N8R3 303 aa10.94□□□□□ -0.66
SNX1-213ENST00000561026 IGHV3-38A0A0C4DH36 116 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 GGTLC3B5MD39 225 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 RS1O15537 224 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 CIDEAO60543 219 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 CXorf1O96002 111 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 GCGP01275 180 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 PPT1P50897 306 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 CFAP126Q5VTH2 177 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 MED28Q9H204 178 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 SH3BGRL3Q9H299 93 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 TMEM167BQ9NRX6 74 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 EPDR1Q9UM22 224 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 TNFSF18Q9UNG2 199 aa10.93□□□□□ -0.66
SNX1-213ENST00000561026 TRBV6-4A0A1B0GX49 114 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 XGP55808 180 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 FLI1Q01543 452 aaPredicted RBP10.92□□□□□ -0.66
SNX1-213ENST00000561026 SMUG1Q53HV7 270 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 Q5BKY6 102 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 DPPA3Q6W0C5 159 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 PRNTQ86SH4 94 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 C9orf85Q96MD7 179 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 PRADC1Q9BSG0 188 aa10.92□□□□□ -0.66
SNX1-213ENST00000561026 PTTG1O95997 202 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 KRTAP10-1P60331 282 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 ZFP69Q49AA0 526 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 LINC01556Q5JQF7 62 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 CYB561D1Q8N8Q1 229 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 TMEM75Q8N9X5 138 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 PTH2Q96A98 100 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 ACTR3CQ9C0K3 210 aaPredicted RBP10.91□□□□□ -0.66
SNX1-213ENST00000561026 BATF3Q9NR55 127 aa10.91□□□□□ -0.66
SNX1-213ENST00000561026 IGHV3-73A0A0B4J1V6 119 aa10.9□□□□□ -0.66
SNX1-213ENST00000561026 EPM2AB3EWF7 344 aa10.9□□□□□ -0.66
SNX1-213ENST00000561026 RHOHQ15669 191 aa10.9□□□□□ -0.66
SNX1-213ENST00000561026 SAPCD1Q5SSQ6 148 aa10.9□□□□□ -0.66
SNX1-213ENST00000561026 TRAV8-6A0A0B4J262 113 aa10.9□□□□□ -0.67
SNX1-213ENST00000561026 A0A1W2PRE2 83 aa10.9□□□□□ -0.67
SNX1-213ENST00000561026 PGPEP1LA6NFU8 196 aa10.9□□□□□ -0.67
SNX1-213ENST00000561026 RNASE3P12724 160 aaKnown RBP10.9□□□□□ -0.67
SNX1-213ENST00000561026 ZNF506Q5JVG8 444 aa10.9□□□□□ -0.67
SNX1-213ENST00000561026 BOLA1Q9Y3E2 137 aa10.9□□□□□ -0.67
SNX1-213ENST00000561026 IBA57-AS1B1ANH7 110 aa10.89□□□□□ -0.67
SNX1-213ENST00000561026 GIPP09681 153 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 301 ms