RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZFP30Q9Y2G7 519 aa4.13□□□□□ -1.75
VPS13C-209ENST00000560637 MXRA5Q9NR99 2828 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 DEFB114Q30KQ6 69 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 C1orf194Q5T5A4 169 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 SPAG8Q99932 426 aaPredicted RBP4.12□□□□□ -1.75
VPS13C-209ENST00000560637 OTOGQ6ZRI0 2925 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 IGKV3D-20A0A0C4DH25 116 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 IGHV3-38A0A0C4DH36 116 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 WI2-2373I1.2A0A1W2PRP0 233 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 IGLV1-40P01703 118 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 CD5P06127 495 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 SHISA2Q6UWI4 295 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 TMEM136Q6ZRR5 245 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 NDUFA11Q86Y39 141 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 OR4C5Q8NGB2 326 aa4.12□□□□□ -1.75
VPS13C-209ENST00000560637 TRAV26-2A0A0B4J265 109 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 J3QL48 77 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 UBE2CO00762 179 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 NUDT3O95989 172 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 OR5AL1P0C617 328 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 PDE6HQ13956 83 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 BATFQ16520 125 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 IQCJQ1A5X6 159 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 AMMECR1LQ6DCA0 310 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 Q6ZQT7 251 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 NEGR1Q7Z3B1 354 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 MCRIP2Q9BUT9 160 aaKnown RBP4.11□□□□□ -1.75
VPS13C-209ENST00000560637 SMAD5-AS1Q9Y6J3 95 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 TRAV1-1A0A0B4J248 108 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 PROK1P58294 105 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 HBBP68871 147 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 AMN1Q8IY45 258 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 FAM19A2Q8N3H0 131 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 C20orf173Q96LM9 149 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 CDIP1Q9H305 208 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 SMDT1Q9H4I9 107 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 GHRHP01286 108 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 TRGC1P0CF51 173 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 KRTAP1-1Q07627 177 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 MAJINQ3KP22 176 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 OR10AG1Q8NH19 301 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 KCNS1Q96KK3 526 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 MAP6D1Q9H9H5 199 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 IL36BQ9NZH7 164 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 TNFRSF18Q9Y5U5 241 aa4.11□□□□□ -1.75
VPS13C-209ENST00000560637 C7orf71A4D174 169 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 F8W735 103 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-209ENST00000560637 ZNF561-AS1K7EIQ3 104 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 PMCHL1Q16048 86 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 SAMD5Q5TGI4 173 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 OR11H2Q8NH07 326 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 PMCHL2Q9BQD1 86 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE12JA6NER3 117 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 CXCL1P09341 107 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 DAD1P61803 113 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE1Q13065 139 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE4Q13068 117 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE5Q13069 117 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 GAGE13Q4V321 117 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 WDR73Q6P4I2 378 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 OR10D4PQ8NGN7 298 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 C1QTNF4Q9BXJ3 329 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 MSRB1Q9NZV6 116 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 IGHV1OR15-1A0A075B7D0 117 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 INS-IGF2F8WCM5 200 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 G3V4G9 280 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 PFN1P07737 140 aaKnown RBP4.1□□□□□ -1.75
VPS13C-209ENST00000560637 RPS20P60866 119 aaKnown RBP4.1□□□□□ -1.75
VPS13C-209ENST00000560637 KLF5Q13887 457 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-209ENST00000560637 SAMD13Q5VXD3 122 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 LYPD1Q8N2G4 141 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 NUP35Q8NFH5 326 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 AP1S3Q96PC3 154 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 CSTL1Q9H114 145 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 RETNQ9HD89 108 aa4.1□□□□□ -1.75
VPS13C-209ENST00000560637 LOC102724200A0A096LPH7 203 aaPredicted RBP4.09□□□□□ -1.75
VPS13C-209ENST00000560637 K7EN84 100 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 UBE2L6O14933 153 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 IGLC2P0DOY2 106 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 S100A12P80511 92 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 TNP2Q05952 138 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 PRELID3AQ96N28 172 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 JPT2Q9H910 190 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 TMEM14CQ9P0S9 112 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 TRGV11A0A075B6L2 103 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 HSBP1L1C9JCN9 74 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 FOXI2Q6ZQN5 318 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 ATOH7Q8N100 152 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 ATP6V0BQ99437 205 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 CHCHD5Q9BSY4 110 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 TP53TG3Q9ULZ0 132 aa4.09□□□□□ -1.75
VPS13C-209ENST00000560637 K7EMT4 169 aa4.09□□□□□ -1.76
VPS13C-209ENST00000560637 AZU1P20160 251 aa4.09□□□□□ -1.76
VPS13C-209ENST00000560637 TSKUQ8WUA8 353 aa4.09□□□□□ -1.76
VPS13C-209ENST00000560637 IGF2BP2-AS1Q96M15 143 aa4.09□□□□□ -1.76
VPS13C-209ENST00000560637 OSTCQ9NRP0 149 aa4.09□□□□□ -1.76
VPS13C-209ENST00000560637 ZNF492Q9P255 531 aa4.09□□□□□ -1.76
VPS13C-209ENST00000560637 D6R8Y8 96 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 FRMD6-AS1P0C7T7 363 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 ZNF80P51504 273 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms