RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SIVA1O15304 175 aa12.09□□□□□ -0.47
HDDC3-205ENST00000559898 IGLV2-11P01706 119 aa12.09□□□□□ -0.47
HDDC3-205ENST00000559898 ZNF726P1Q15940 193 aa12.09□□□□□ -0.47
HDDC3-205ENST00000559898 TDRG1Q3Y452 100 aa12.09□□□□□ -0.47
HDDC3-205ENST00000559898 TTC32Q5I0X7 151 aa12.09□□□□□ -0.47
HDDC3-205ENST00000559898 RPL7L1Q6DKI1 246 aaKnown RBP12.09□□□□□ -0.47
HDDC3-205ENST00000559898 TRGV11A0A075B6L2 103 aa12.08□□□□□ -0.48
HDDC3-205ENST00000559898 A0A1W2PPQ1 181 aa12.08□□□□□ -0.48
HDDC3-205ENST00000559898 GGTLC3B5MD39 225 aa12.08□□□□□ -0.48
HDDC3-205ENST00000559898 DPPA3Q6W0C5 159 aa12.08□□□□□ -0.48
HDDC3-205ENST00000559898 WFDC10BQ8IUB3 73 aa12.08□□□□□ -0.48
HDDC3-205ENST00000559898 SPXQ9BT56 116 aa12.08□□□□□ -0.48
HDDC3-205ENST00000559898 PSMG3Q9BT73 122 aaPredicted RBP12.08□□□□□ -0.48
HDDC3-205ENST00000559898 TRAV21A0A0B4J279 112 aa12.07□□□□□ -0.48
HDDC3-205ENST00000559898 TCRAP04437 139 aa12.07□□□□□ -0.48
HDDC3-205ENST00000559898 GYPEP15421 78 aa12.07□□□□□ -0.48
HDDC3-205ENST00000559898 FAM74A1Q5RGS3 127 aa12.07□□□□□ -0.48
HDDC3-205ENST00000559898 LINC00479Q96M42 142 aa12.07□□□□□ -0.48
HDDC3-205ENST00000559898 GIPP09681 153 aaPredicted RBP12.06□□□□□ -0.48
HDDC3-205ENST00000559898 SUMO1P63165 101 aaKnown RBP12.06□□□□□ -0.48
HDDC3-205ENST00000559898 IQCF2Q8IXL9 164 aa12.06□□□□□ -0.48
HDDC3-205ENST00000559898 PSG8Q9UQ74 426 aa12.06□□□□□ -0.48
HDDC3-205ENST00000559898 FXYD6-FXYD2A0A087WZ82 144 aa12.05□□□□□ -0.48
HDDC3-205ENST00000559898 TRAV4A0A0B4J268 109 aa12.05□□□□□ -0.48
HDDC3-205ENST00000559898 M0R2P5 195 aa12.05□□□□□ -0.48
HDDC3-205ENST00000559898 MRPL23Q16540 153 aaKnown RBP12.05□□□□□ -0.48
HDDC3-205ENST00000559898 NEGR1Q7Z3B1 354 aa12.05□□□□□ -0.48
HDDC3-205ENST00000559898 TNFSF18Q9UNG2 199 aa12.05□□□□□ -0.48
HDDC3-205ENST00000559898 TRAV34A0A0B4J273 112 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 C9JCJ5 164 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 PRNTQ86SH4 94 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 ARL6IP6Q8N6S5 226 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 C5orf17Q8NAS9 161 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 OR4C5Q8NGB2 326 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 EPDR1Q9UM22 224 aa12.04□□□□□ -0.48
HDDC3-205ENST00000559898 SMLR1H3BR10 107 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 GCGP01275 180 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 DNAH10OSP0CZ25 163 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 SRIP30626 198 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 FGF8P55075 233 aaPredicted RBP12.03□□□□□ -0.48
HDDC3-205ENST00000559898 SLAQ13239 276 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 ASB13Q8WXK3 278 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 SDF2L1Q9HCN8 221 aa12.03□□□□□ -0.48
HDDC3-205ENST00000559898 IGHV3-73A0A0B4J1V6 119 aa12.02□□□□□ -0.49
HDDC3-205ENST00000559898 PGPEP1LA6NFU8 196 aa12.02□□□□□ -0.49
HDDC3-205ENST00000559898 CXorf1O96002 111 aa12.02□□□□□ -0.49
HDDC3-205ENST00000559898 GATA1P15976 413 aaPredicted RBP12.02□□□□□ -0.49
HDDC3-205ENST00000559898 BTF3P20290 206 aaKnown RBP12.02□□□□□ -0.49
HDDC3-205ENST00000559898 UBE2G2P60604 165 aa12.02□□□□□ -0.49
HDDC3-205ENST00000559898 SERF2P84101 59 aa12.02□□□□□ -0.49
HDDC3-205ENST00000559898 FLI1Q01543 452 aaPredicted RBP12.02□□□□□ -0.49
HDDC3-205ENST00000559898 ACTR3CQ9C0K3 210 aaPredicted RBP12.02□□□□□ -0.49
HDDC3-205ENST00000559898 CDK2AP2O75956 126 aa12.01□□□□□ -0.49
HDDC3-205ENST00000559898 RNASE3P12724 160 aaKnown RBP12.01□□□□□ -0.49
HDDC3-205ENST00000559898 MAPKAPK5-AS1Q8N8E1 139 aa12.01□□□□□ -0.49
HDDC3-205ENST00000559898 OR2T35Q8NGX2 323 aa12.01□□□□□ -0.49
HDDC3-205ENST00000559898 C9orf85Q96MD7 179 aa12.01□□□□□ -0.49
HDDC3-205ENST00000559898 CYTL1Q9NRR1 136 aa12.01□□□□□ -0.49
HDDC3-205ENST00000559898 CFAP126Q5VTH2 177 aa12□□□□□ -0.49
HDDC3-205ENST00000559898 INO80EQ8NBZ0 244 aaPredicted RBP12□□□□□ -0.49
HDDC3-205ENST00000559898 IGKV3D-20A0A0C4DH25 116 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 RS1O15537 224 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 MBP02144 154 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 ZNF506Q5JVG8 444 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 Q6ZSN1 163 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 CYB561D1Q8N8Q1 229 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 SLC25A29Q8N8R3 303 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 PCNPQ8WW12 178 aaKnown RBP11.99□□□□□ -0.49
HDDC3-205ENST00000559898 KCNS1Q96KK3 526 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 TMEM167BQ9NRX6 74 aa11.99□□□□□ -0.49
HDDC3-205ENST00000559898 PFN1P07737 140 aaKnown RBP11.98□□□□□ -0.49
HDDC3-205ENST00000559898 ZNF876PQ49A33 203 aa11.98□□□□□ -0.49
HDDC3-205ENST00000559898 NDFIP1Q9BT67 221 aa11.98□□□□□ -0.49
HDDC3-205ENST00000559898 Q9UF83 564 aa11.98□□□□□ -0.49
HDDC3-205ENST00000559898 LY96Q9Y6Y9 160 aa11.98□□□□□ -0.49
HDDC3-205ENST00000559898 ARL2-SNX15V9GYD0 113 aa11.98□□□□□ -0.49
HDDC3-205ENST00000559898 CTXND1A0A1B0GTU2 59 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 SERTM2A0A1B0GWG4 89 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 A0A1W2PRE2 83 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 TAAR5O14804 337 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 ORM1P02763 201 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 CRIP1P50238 77 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 SMUG1Q53HV7 270 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 JPT2Q9H910 190 aa11.97□□□□□ -0.49
HDDC3-205ENST00000559898 BORCS7-ASMTA0A0B4J1R7 106 aa11.96□□□□□ -0.49
HDDC3-205ENST00000559898 FBLL1A6NHQ2 334 aaKnown RBP11.96□□□□□ -0.49
HDDC3-205ENST00000559898 FAM74A7A6NL05 159 aa11.96□□□□□ -0.49
HDDC3-205ENST00000559898 ARPC5O15511 151 aa11.96□□□□□ -0.49
HDDC3-205ENST00000559898 FHITP49789 147 aa11.96□□□□□ -0.49
HDDC3-205ENST00000559898 NHLRC2Q8NBF2 726 aa11.96□□□□□ -0.49
HDDC3-205ENST00000559898 PEX7O00628 323 aa11.95□□□□□ -0.5
HDDC3-205ENST00000559898 Q86TA4 180 aa11.95□□□□□ -0.5
HDDC3-205ENST00000559898 Q8N3U1 123 aa11.95□□□□□ -0.5
HDDC3-205ENST00000559898 TXNDC17Q9BRA2 123 aa11.95□□□□□ -0.5
HDDC3-205ENST00000559898 MSRB1Q9NZV6 116 aa11.95□□□□□ -0.5
HDDC3-205ENST00000559898 A0A087WTM6 91 aa11.94□□□□□ -0.5
HDDC3-205ENST00000559898 K7EQM0 130 aa11.94□□□□□ -0.5
HDDC3-205ENST00000559898 IFNA7P01567 189 aa11.94□□□□□ -0.5
HDDC3-205ENST00000559898 ZC2HC1AQ96GY0 325 aa11.94□□□□□ -0.5
HDDC3-205ENST00000559898 SAMD10Q9BYL1 202 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms