RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 MUC7Q8TAX7 377 aa7.23□□□□□ -1.25
USP3-216ENST00000559873 SMIM7Q9BQ49 75 aa7.23□□□□□ -1.25
USP3-216ENST00000559873 MLST8Q9BVC4 326 aa7.23□□□□□ -1.25
USP3-216ENST00000559873 DKK2Q9UBU2 259 aa7.23□□□□□ -1.25
USP3-216ENST00000559873 RAB19A4D1S5 217 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 C3orf84H3BNL1 204 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 SH2D1AO60880 128 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 ORM1P02763 201 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 TYMSP04818 313 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 SRP19P09132 144 aaKnown RBP7.22□□□□□ -1.25
USP3-216ENST00000559873 S100A4P26447 101 aaKnown RBP7.22□□□□□ -1.25
USP3-216ENST00000559873 ASIPP42127 132 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 DAD1P61803 113 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 IFITM2Q01629 132 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 DAZ2Q13117 558 aaKnown RBP7.22□□□□□ -1.25
USP3-216ENST00000559873 OR5I1Q13606 314 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 PRR27Q6MZM9 219 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 DAZAP1Q96EP5 407 aaKnown RBP7.22□□□□□ -1.25
USP3-216ENST00000559873 SPXQ9BT56 116 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 NOP10Q9NPE3 64 aaKnown RBP7.22□□□□□ -1.25
USP3-216ENST00000559873 GSN-AS1Q9NRJ2 163 aa7.22□□□□□ -1.25
USP3-216ENST00000559873 PLAC8L1A1L4L8 177 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 NUPR2A6NF83 97 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 ZNF727A8MUV8 499 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 B4DEV8 164 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 M0R036 132 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 PRM2P04554 102 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 NANOS2P60321 138 aaKnown RBP7.21□□□□□ -1.26
USP3-216ENST00000559873 LGALS9BQ3B8N2 356 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 LINC01559Q495D7 138 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 Q6ZQT7 251 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 C11orf72Q8NBR9 251 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 CELA1Q9UNI1 258 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 LY96Q9Y6Y9 160 aa7.21□□□□□ -1.26
USP3-216ENST00000559873 TRBV20OR9-2A0A075B6H5 130 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 TRGV1A0A0A0MS02 117 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 TRAV10A0A0B4J240 114 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 IGHV3-16A0A0C4DH30 117 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 XKRY2A2RUG3 117 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 P01737 135 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 DEFB130BP0DP73 79 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 DEFB130AP0DP74 79 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 RPS20P60866 119 aaKnown RBP7.2□□□□□ -1.26
USP3-216ENST00000559873 TP53TG3Q9ULZ0 132 aa7.2□□□□□ -1.26
USP3-216ENST00000559873 TRGV2A0A075B6R0 118 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 TMSB15BA0A087X1C1 80 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 PGPEP1LA6NFU8 196 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 KRBOX1C9JBD0 128 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 SPINK4O60575 86 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 IGLV2-8P01709 118 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 CXCL1P09341 107 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 CRIP1P50238 77 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 C12orf74Q32Q52 190 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 SOHLH1Q5JUK2 328 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 UQCC3Q6UW78 93 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 Q6ZTC4 211 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 NDUFAF3Q9BU61 184 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 C11orf21Q9P2W6 132 aa7.19□□□□□ -1.26
USP3-216ENST00000559873 KLK5Q9Y337 293 aaPredicted RBP7.19□□□□□ -1.26
USP3-216ENST00000559873 DNAH7Q8WXX0 4024 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 IGKV3D-20A0A0C4DH25 116 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 GAGE12BA1L429 117 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 M0R2P5 195 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 GNRH2O43555 120 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 GAGE7O76087 117 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 ATP5G1P05496 136 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 GAGE12FP0CL80 117 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 GAGE12GP0CL81 117 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 GAGE12IP0CL82 117 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 MED14OSP0DP75 135 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 DNLZQ5SXM8 178 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 LINC00612Q8N6U2 182 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 SYT8Q8NBV8 401 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 OCC1Q8TAD7 63 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 PHLDA1Q8WV24 401 aaPredicted RBP7.18□□□□□ -1.26
USP3-216ENST00000559873 C18orf15Q96N68 181 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 IL36BQ9NZH7 164 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 MDFICQ9P1T7 246 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 NAT8Q9UHE5 227 aa7.18□□□□□ -1.26
USP3-216ENST00000559873 DEFB131BA0A096LNP1 70 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 C19orf71A6NCJ1 209 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 H3BVH4 76 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 SFTA3P0C7M3 94 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 SRSF3P84103 164 aaKnown RBP7.17□□□□□ -1.26
USP3-216ENST00000559873 TMEM241Q24JQ0 296 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 Q6ZTI0 123 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 OR2D3Q8NGH3 330 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 RASL10AQ92737 203 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 C9orf85Q96MD7 179 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 MRPL16Q9NX20 251 aaKnown RBP7.17□□□□□ -1.26
USP3-216ENST00000559873 PHLDA3Q9Y5J5 127 aa7.17□□□□□ -1.26
USP3-216ENST00000559873 GRIFINA4D1Z8 144 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 RNASE3P12724 160 aaKnown RBP7.16□□□□□ -1.26
USP3-216ENST00000559873 HTN3P15516 51 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 TCTAP57738 103 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 ERVFC1-1P60608 527 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 RPL19P84098 196 aaKnown RBP7.16□□□□□ -1.26
USP3-216ENST00000559873 ADIRFQ15847 76 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 ZNF876PQ49A33 203 aa7.16□□□□□ -1.26
USP3-216ENST00000559873 PIK3CD-AS1Q5SR53 167 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms