RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 GSN-AS1Q9NRJ2 163 aa10.09□□□□□ -0.79
VIPAS39-208ENST00000556412 TRGV11A0A075B6L2 103 aa10.08□□□□□ -0.8
VIPAS39-208ENST00000556412 SNURFLB1AK76 121 aa10.08□□□□□ -0.8
VIPAS39-208ENST00000556412 SFTA3P0C7M3 94 aa10.08□□□□□ -0.8
VIPAS39-208ENST00000556412 SOHLH1Q5JUK2 328 aa10.08□□□□□ -0.8
VIPAS39-208ENST00000556412 OCC1Q8TAD7 63 aa10.08□□□□□ -0.8
VIPAS39-208ENST00000556412 DAZAP1Q96EP5 407 aaKnown RBP10.08□□□□□ -0.8
VIPAS39-208ENST00000556412 B4DEV8 164 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 TYMSP04818 313 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 NDUFA5Q16718 116 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 EDA2RQ9HAV5 297 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 NOP10Q9NPE3 64 aaKnown RBP10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 MDFICQ9P1T7 246 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 CELA1Q9UNI1 258 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 TIMM8BQ9Y5J9 83 aaPredicted RBP10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 DNAH9Q9NYC9 4486 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 IGKV3D-20A0A0C4DH25 116 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 CXorf65A6NEN9 183 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 ZNF415Q09FC8 603 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 TDRG1Q3Y452 100 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 FAM222AQ5U5X8 452 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 BIN3Q9NQY0 253 aa10.07□□□□□ -0.8
VIPAS39-208ENST00000556412 PLAC8L1A1L4L8 177 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 GRIFINA4D1Z8 144 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 K7EN84 100 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 SPART-AS1P0CW21 52 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 RPL19P84098 196 aaKnown RBP10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 FAM74A3Q4VXF1 159 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 C11orf72Q8NBR9 251 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 C11orf45Q8TAV5 145 aa10.06□□□□□ -0.8
VIPAS39-208ENST00000556412 DEFB130BP0DP73 79 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 DEFB130AP0DP74 79 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 S100A4P26447 101 aaKnown RBP10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 TMEM241Q24JQ0 296 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 IBA57Q5T440 356 aaKnown RBP10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 LINC01551Q86U37 167 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 TENM3Q9P273 2699 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 COL7A1Q02388 2944 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 IGHV3-16A0A0C4DH30 117 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 LINC00862A6NCI5 91 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 KRBOX1C9JBD0 128 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 P01737 135 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 ASIPP42127 132 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 TCL1AP56279 114 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 NANOS2P60321 138 aaKnown RBP10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 LINC01559Q495D7 138 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 UQCC3Q6UW78 93 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 RNASE7Q9H1E1 156 aaKnown RBP10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 DKK2Q9UBU2 259 aa10.05□□□□□ -0.8
VIPAS39-208ENST00000556412 HUWE1Q7Z6Z7 4374 aaKnown RBP10.04□□□□□ -0.8
VIPAS39-208ENST00000556412 ADIRFQ15847 76 aa10.04□□□□□ -0.8
VIPAS39-208ENST00000556412 OR2D3Q8NGH3 330 aa10.04□□□□□ -0.8
VIPAS39-208ENST00000556412 IL17DQ8TAD2 202 aa10.04□□□□□ -0.8
VIPAS39-208ENST00000556412 NAT8Q9UHE5 227 aa10.04□□□□□ -0.8
VIPAS39-208ENST00000556412 TRGV1A0A0A0MS02 117 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 S100A1P23297 94 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 ERVFC1-1P60608 527 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 MRPL16Q9NX20 251 aaKnown RBP10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 LY96Q9Y6Y9 160 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 TEX48A0A1B0GUV7 120 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 GAGE12BA1L429 117 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 C19orf71A6NCJ1 209 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 LYRM9A8MSI8 78 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 H3BVH4 76 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 GAGE7O76087 117 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 GAGE12FP0CL80 117 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 GAGE12GP0CL81 117 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 GAGE12IP0CL82 117 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 DAD1P61803 113 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 NUDT10Q8NFP7 164 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 NUDT11Q96G61 164 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 WWC2-AS2Q96NR7 200 aa10.03□□□□□ -0.8
VIPAS39-208ENST00000556412 RPL23P62829 140 aaKnown RBP10.02□□□□□ -0.81
VIPAS39-208ENST00000556412 DAZ2Q13117 558 aaKnown RBP10.02□□□□□ -0.81
VIPAS39-208ENST00000556412 Q6ZTI0 123 aa10.02□□□□□ -0.81
VIPAS39-208ENST00000556412 GZMBP10144 247 aa10.01□□□□□ -0.81
VIPAS39-208ENST00000556412 C12orf74Q32Q52 190 aa10.01□□□□□ -0.81
VIPAS39-208ENST00000556412 SPXQ9BT56 116 aa10.01□□□□□ -0.81
VIPAS39-208ENST00000556412 TPPP3Q9BW30 176 aa10.01□□□□□ -0.81
VIPAS39-208ENST00000556412 TGP01266 2768 aa10.01□□□□□ -0.81
VIPAS39-208ENST00000556412 TRGV2A0A075B6R0 118 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 TMEM218A2RU14 115 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 F8W036 122 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 ARMS2P0C7Q2 107 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 RNASE3P12724 160 aaKnown RBP10□□□□□ -0.81
VIPAS39-208ENST00000556412 HTN3P15516 51 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 Q6ZTC4 211 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 RPP21Q9H633 154 aaKnown RBP10□□□□□ -0.81
VIPAS39-208ENST00000556412 GATCO43716 136 aaKnown RBP10□□□□□ -0.81
VIPAS39-208ENST00000556412 SPINK4O60575 86 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 ISOC2Q96AB3 205 aa10□□□□□ -0.81
VIPAS39-208ENST00000556412 XKRY2A2RUG3 117 aa9.99□□□□□ -0.81
VIPAS39-208ENST00000556412 M0R2P5 195 aa9.99□□□□□ -0.81
VIPAS39-208ENST00000556412 RPS20P60866 119 aaKnown RBP9.99□□□□□ -0.81
VIPAS39-208ENST00000556412 SSTP61278 116 aa9.99□□□□□ -0.81
VIPAS39-208ENST00000556412 C15orf54Q8N8G6 183 aa9.99□□□□□ -0.81
VIPAS39-208ENST00000556412 C9orf85Q96MD7 179 aa9.99□□□□□ -0.81
VIPAS39-208ENST00000556412 MUC21A0A0G2JKD1 596 aa9.98□□□□□ -0.81
VIPAS39-208ENST00000556412 MUC21A0A140T8X8 626 aa9.98□□□□□ -0.81
VIPAS39-208ENST00000556412 ADCYAP1P18509 176 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms