RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NEGR1Q7Z3B1 354 aa11.19□□□□□ -0.62
VPS29-207ENST00000549970 NDFIP1Q9BT67 221 aa11.19□□□□□ -0.62
VPS29-207ENST00000549970 ABCA13Q86UQ4 5058 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 K7EQD1 137 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 M0R2P5 195 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 TCRAP04437 139 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 GYPEP15421 78 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 SRIP30626 198 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 SERF2P84101 59 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 IQCF2Q8IXL9 164 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 C5orf17Q8NAS9 161 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 INO80EQ8NBZ0 244 aaPredicted RBP11.18□□□□□ -0.62
VPS29-207ENST00000549970 OR4C5Q8NGB2 326 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 PCNPQ8WW12 178 aaKnown RBP11.18□□□□□ -0.62
VPS29-207ENST00000549970 SDF2L1Q9HCN8 221 aa11.18□□□□□ -0.62
VPS29-207ENST00000549970 FXYD6-FXYD2A0A087WZ82 144 aa11.17□□□□□ -0.62
VPS29-207ENST00000549970 TRAV4A0A0B4J268 109 aa11.17□□□□□ -0.62
VPS29-207ENST00000549970 SERTM2A0A1B0GWG4 89 aa11.17□□□□□ -0.62
VPS29-207ENST00000549970 BTF3P20290 206 aaKnown RBP11.17□□□□□ -0.62
VPS29-207ENST00000549970 SUN5Q8TC36 379 aa11.17□□□□□ -0.62
VPS29-207ENST00000549970 KCNS1Q96KK3 526 aa11.17□□□□□ -0.62
VPS29-207ENST00000549970 ACTR3CQ9C0K3 210 aaPredicted RBP11.17□□□□□ -0.62
VPS29-207ENST00000549970 TMEM167BQ9NRX6 74 aa11.17□□□□□ -0.62
VPS29-207ENST00000549970 RNF222A6NCQ9 220 aa11.16□□□□□ -0.62
VPS29-207ENST00000549970 K7EQM0 130 aa11.16□□□□□ -0.62
VPS29-207ENST00000549970 CXorf1O96002 111 aa11.16□□□□□ -0.62
VPS29-207ENST00000549970 ZNF80P51504 273 aaPredicted RBP11.16□□□□□ -0.62
VPS29-207ENST00000549970 SUMO1P63165 101 aaKnown RBP11.16□□□□□ -0.62
VPS29-207ENST00000549970 RPL7L1Q6DKI1 246 aaKnown RBP11.16□□□□□ -0.62
VPS29-207ENST00000549970 ASB13Q8WXK3 278 aa11.16□□□□□ -0.62
VPS29-207ENST00000549970 TNFSF18Q9UNG2 199 aa11.16□□□□□ -0.62
VPS29-207ENST00000549970 PSG8Q9UQ74 426 aa11.16□□□□□ -0.62
VPS29-207ENST00000549970 GGTLC3B5MD39 225 aa11.15□□□□□ -0.62
VPS29-207ENST00000549970 GCGP01275 180 aa11.15□□□□□ -0.62
VPS29-207ENST00000549970 ORM1P02763 201 aa11.15□□□□□ -0.62
VPS29-207ENST00000549970 KRTAP10-2P60368 255 aa11.15□□□□□ -0.62
VPS29-207ENST00000549970 PRNTQ86SH4 94 aa11.15□□□□□ -0.62
VPS29-207ENST00000549970 BORCS7-ASMTA0A0B4J1R7 106 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 LOC100131303A0A0U1RQF7 123 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 C9JCJ5 164 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 FLI1Q01543 452 aaPredicted RBP11.14□□□□□ -0.63
VPS29-207ENST00000549970 Q6ZRN7 208 aaPredicted RBP11.14□□□□□ -0.63
VPS29-207ENST00000549970 CYB561D1Q8N8Q1 229 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 OR2T35Q8NGX2 323 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 TXNDC17Q9BRA2 123 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 C11orf21Q9P2W6 132 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 EPDR1Q9UM22 224 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 TNFRSF18Q9Y5U5 241 aa11.14□□□□□ -0.63
VPS29-207ENST00000549970 CDK2AP2O75956 126 aa11.13□□□□□ -0.63
VPS29-207ENST00000549970 IGLV2-11P01706 119 aa11.13□□□□□ -0.63
VPS29-207ENST00000549970 ZFP69Q49AA0 526 aa11.13□□□□□ -0.63
VPS29-207ENST00000549970 WFDC10BQ8IUB3 73 aa11.13□□□□□ -0.63
VPS29-207ENST00000549970 TMEM75Q8N9X5 138 aa11.13□□□□□ -0.63
VPS29-207ENST00000549970 LY96Q9Y6Y9 160 aa11.13□□□□□ -0.63
VPS29-207ENST00000549970 TAAR5O14804 337 aa11.12□□□□□ -0.63
VPS29-207ENST00000549970 PFN1P07737 140 aaKnown RBP11.12□□□□□ -0.63
VPS29-207ENST00000549970 ZNF726P1Q15940 193 aa11.12□□□□□ -0.63
VPS29-207ENST00000549970 SMUG1Q53HV7 270 aa11.12□□□□□ -0.63
VPS29-207ENST00000549970 KRTAP4-5Q9BYR2 181 aa11.12□□□□□ -0.63
VPS29-207ENST00000549970 TRAV9-2A0A087WT02 112 aa11.11□□□□□ -0.63
VPS29-207ENST00000549970 CTXND1A0A1B0GTU2 59 aa11.11□□□□□ -0.63
VPS29-207ENST00000549970 A0A1W2PRE2 83 aa11.11□□□□□ -0.63
VPS29-207ENST00000549970 FBLL1A6NHQ2 334 aaKnown RBP11.11□□□□□ -0.63
VPS29-207ENST00000549970 GATA1P15976 413 aaPredicted RBP11.11□□□□□ -0.63
VPS29-207ENST00000549970 UBE2G2P60604 165 aa11.11□□□□□ -0.63
VPS29-207ENST00000549970 ZNF876PQ49A33 203 aa11.11□□□□□ -0.63
VPS29-207ENST00000549970 NHLRC2Q8NBF2 726 aa11.11□□□□□ -0.63
VPS29-207ENST00000549970 TRAV34A0A0B4J273 112 aa11.1□□□□□ -0.63
VPS29-207ENST00000549970 FGF8P55075 233 aaPredicted RBP11.1□□□□□ -0.63
VPS29-207ENST00000549970 DPPA3Q6W0C5 159 aa11.1□□□□□ -0.63
VPS29-207ENST00000549970 LINC00479Q96M42 142 aa11.1□□□□□ -0.63
VPS29-207ENST00000549970 IGHV3-73A0A0B4J1V6 119 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 G3V3Q6 166 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 IFNA7P01567 189 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 EVI2AP22794 236 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 RGS21Q2M5E4 152 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 SAPCD1Q5SSQ6 148 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 AKR1C8PQ5T2L2 129 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 CFAP126Q5VTH2 177 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 NFE4Q86UQ8 179 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 MAPKAPK5-AS1Q8N8E1 139 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 C9orf85Q96MD7 179 aa11.09□□□□□ -0.63
VPS29-207ENST00000549970 ARPC5O15511 151 aa11.08□□□□□ -0.64
VPS29-207ENST00000549970 RS1O15537 224 aa11.08□□□□□ -0.64
VPS29-207ENST00000549970 ERVFC1-1P60608 527 aa11.08□□□□□ -0.64
VPS29-207ENST00000549970 SH2D6Q7Z4S9 175 aa11.08□□□□□ -0.64
VPS29-207ENST00000549970 SLC25A29Q8N8R3 303 aa11.08□□□□□ -0.64
VPS29-207ENST00000549970 ARL2-SNX15V9GYD0 113 aa11.08□□□□□ -0.64
VPS29-207ENST00000549970 PGPEP1LA6NFU8 196 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 PEX7O00628 323 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 EREGO14944 169 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 DNAH10OSP0CZ25 163 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 RNASE3P12724 160 aaKnown RBP11.07□□□□□ -0.64
VPS29-207ENST00000549970 FUSP35637 526 aaKnown RBP eCLIP11.07□□□□□ -0.64
VPS29-207ENST00000549970 PPT1P50897 306 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 ZNF506Q5JVG8 444 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 PRADC1Q9BSG0 188 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 MSRB1Q9NZV6 116 aa11.07□□□□□ -0.64
VPS29-207ENST00000549970 IGKV3D-20A0A0C4DH25 116 aa11.06□□□□□ -0.64
VPS29-207ENST00000549970 FAM74A7A6NL05 159 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms