RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 COX8CQ7Z4L0 72 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 IGF2BP2-AS1Q96M15 143 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 Q9H3A6 140 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 AAMDCQ9H7C9 122 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 ZNF331Q9NQX6 463 aaPredicted RBP6.36□□□□□ -1.39
VPS29-203ENST00000546588 SPANXB1Q9NS25 103 aaPredicted RBP6.36□□□□□ -1.39
VPS29-203ENST00000546588 TMEM242Q9NWH2 141 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 HSPB8Q9UJY1 196 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 NF1P21359 2839 aa6.36□□□□□ -1.39
VPS29-203ENST00000546588 TRAV2A0A0B4J234 112 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 RBAKDNA6NC62 111 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 LINC01619G3V211 115 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 CHEK1O14757 476 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 APOHP02749 345 aaPredicted RBP6.35□□□□□ -1.39
VPS29-203ENST00000546588 AMBPP02760 352 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 TCRAP04437 139 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 SMIM17P0DL12 118 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 GALR1P47211 349 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 JOSD1Q15040 202 aaPredicted RBP6.35□□□□□ -1.39
VPS29-203ENST00000546588 TMEM183BQ1AE95 376 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 RPEL1Q2QD12 228 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 OR10D4PQ8NGN7 298 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 GRAMD2BQ96HH9 432 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 NIPSNAP3BQ9BS92 247 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 ZNF747Q9BV97 191 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 SPANXCQ9NY87 97 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 NAT8Q9UHE5 227 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 EPDR1Q9UM22 224 aa6.35□□□□□ -1.39
VPS29-203ENST00000546588 F8P00451 2351 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 G3V4G9 280 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 PEX7O00628 323 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 PHOX2AO14813 284 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 IGLV2-11P01706 119 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 IGLV2-8P01709 118 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 SLC25A5P05141 298 aaKnown RBP6.34□□□□□ -1.39
VPS29-203ENST00000546588 NHLRC4P0CG21 123 aaPredicted RBP6.34□□□□□ -1.39
VPS29-203ENST00000546588 CD28P10747 220 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 TCL1AP56279 114 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 ZNF415Q09FC8 603 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 OR8I2Q8N0Y5 310 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 TMEM75Q8N9X5 138 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 RNF183Q96D59 192 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 SMIM7Q9BQ49 75 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 TUBA4BQ9H853 241 aa6.34□□□□□ -1.39
VPS29-203ENST00000546588 MTORP42345 2549 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 IGHV3-35A0A0C4DH35 117 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 C2orf70A6NJV1 201 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 ZNF727A8MUV8 499 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 LTAP01374 205 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 ESDP10768 282 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 AZU1P20160 251 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 TMEM97Q5BJF2 176 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 HIST2H2BDQ6DRA6 164 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 ADAMTSL5Q6ZMM2 481 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 NDUFA11Q86Y39 141 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 APRG1Q8IVJ8 170 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 KLHL30-AS1Q8NEE0 82 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 DCANP1Q8TF63 244 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 TVP23CQ96ET8 276 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 FMC1Q96HJ9 113 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 DERL1Q9BUN8 251 aa6.33□□□□□ -1.4
VPS29-203ENST00000546588 SETXQ7Z333 2677 aaKnown RBP6.32□□□□□ -1.4
VPS29-203ENST00000546588 TRAV8-2A0A0B4J237 113 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 PGPA6NDG6 321 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 COLCA2A8K830 154 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 ISLRO14498 428 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 NUDT3O95989 172 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 CBLN1P23435 193 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 KRTAP10-3P60369 221 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 RPL23P62829 140 aaKnown RBP6.32□□□□□ -1.4
VPS29-203ENST00000546588 SUMO4Q6EEV6 95 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 C18orf65Q6ZTR6 163 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 Q71RC1 249 aaPredicted RBP6.32□□□□□ -1.4
VPS29-203ENST00000546588 CBLN2Q8IUK8 224 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 ZNF664Q8N3J9 261 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 OR1N2Q8NGR9 330 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 RCHY1Q96PM5 261 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 RHPN1-AS1Q9BWJ2 59 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 TMEM126AQ9H061 195 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 NRN1Q9NPD7 142 aa6.32□□□□□ -1.4
VPS29-203ENST00000546588 MRPL16Q9NX20 251 aaKnown RBP6.32□□□□□ -1.4
VPS29-203ENST00000546588 IGHV3OR16-8A0A075B7F1 116 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 A8MTW9 85 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 K7EN84 100 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 CSN3P07498 182 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 VPREB1P12018 145 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 SYNJ2BPP57105 145 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 IQCJQ1A5X6 159 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 TMEM78Q5T7P6 136 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 IGFL4Q6B9Z1 124 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 FAM231DQ6ZW35 169 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 Q86TA4 180 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 EXOC3-AS1Q8N2X6 119 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 BLNKQ8WV28 456 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 BAALCQ8WXS3 180 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 DNAJC30Q96LL9 226 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 DUX3Q96PT4 197 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 ERG28Q9UKR5 140 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 LENEPQ9Y5L5 61 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 COX11Q9Y6N1 276 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms