RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 DEFB131AP59861 70 aa12.21□□□□□ -0.45
CUX1-211ENST00000546411 SP5Q6BEB4 398 aaPredicted RBP12.21□□□□□ -0.45
CUX1-211ENST00000546411 UBE2E2Q96LR5 201 aa12.21□□□□□ -0.45
CUX1-211ENST00000546411 DKK2Q9UBU2 259 aa12.21□□□□□ -0.45
CUX1-211ENST00000546411 MRPS16Q9Y3D3 137 aaKnown RBP12.21□□□□□ -0.45
CUX1-211ENST00000546411 RPL13AP40429 203 aaKnown RBP12.21□□□□□ -0.46
CUX1-211ENST00000546411 GDF5OSQ5U4N7 250 aa12.21□□□□□ -0.46
CUX1-211ENST00000546411 WIPF2Q8TF74 440 aaPredicted RBP12.21□□□□□ -0.46
CUX1-211ENST00000546411 ACANP16112 2415 aa12.21□□□□□ -0.46
CUX1-211ENST00000546411 DSPP15924 2871 aaKnown RBP12.21□□□□□ -0.46
CUX1-211ENST00000546411 PRRC2AP48634 2157 aaKnown RBP12.2□□□□□ -0.46
CUX1-211ENST00000546411 UBE2L6O14933 153 aa12.2□□□□□ -0.46
CUX1-211ENST00000546411 INS-IGF2F8WCM5 200 aa12.2□□□□□ -0.46
CUX1-211ENST00000546411 A0A1B0GWB2 263 aa12.2□□□□□ -0.46
CUX1-211ENST00000546411 KLF12Q9Y4X4 402 aa12.2□□□□□ -0.46
CUX1-211ENST00000546411 RIPPLY3P57055 190 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 C19orf54Q5BKX5 351 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 COX11Q9Y6N1 276 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 GNRH2O43555 120 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 BUB3O43684 328 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 DUSP14O95147 198 aaKnown RBP12.19□□□□□ -0.46
CUX1-211ENST00000546411 SEC11AP67812 179 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 KIR3DS1Q14943 382 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 STHQ8IWL8 128 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 LINC01356Q8N9X3 169 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 KLHL30-AS1Q8NEE0 82 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 ZNF747Q9BV97 191 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 COL6A3P12111 3177 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 TRGV2A0A075B6R0 118 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 IGHV3-53P01767 116 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 MEIG1Q5JSS6 88 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 PAPPA-AS1Q5QFB9 102 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 PF4P02776 101 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 PEMTQ9UBM1 199 aa12.19□□□□□ -0.46
CUX1-211ENST00000546411 UBE2V1Q13404 147 aa12.18□□□□□ -0.46
CUX1-211ENST00000546411 OR9G4Q8NGQ1 327 aa12.18□□□□□ -0.46
CUX1-211ENST00000546411 MRAP2Q96G30 205 aa12.18□□□□□ -0.46
CUX1-211ENST00000546411 DEFB112Q30KQ8 113 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 MRPL35Q9NZE8 188 aaKnown RBP12.17□□□□□ -0.46
CUX1-211ENST00000546411 TOMM7Q9P0U1 55 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 TP73-AS1Q9UF72 201 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 C19orf84I3L1E1 186 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 NDUFS8O00217 210 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 SAMD5Q5TGI4 173 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 TRAV2A0A0B4J234 112 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 CD28P10747 220 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 ZNF479Q96JC4 524 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 TP53TG3Q9ULZ0 132 aa12.17□□□□□ -0.46
CUX1-211ENST00000546411 DSCR9P59020 149 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 KLF5Q13887 457 aaPredicted RBP12.16□□□□□ -0.46
CUX1-211ENST00000546411 DEFB136Q30KP8 78 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 C2orf66Q6UXQ4 117 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 NDUFA4O00483 81 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 FBXL19-AS1Q494R0 122 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 PHLDA1Q8WV24 401 aaPredicted RBP12.16□□□□□ -0.46
CUX1-211ENST00000546411 TRBV12-3P01733 135 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 NSUN5P1Q3KNT7 163 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 ANKRD39Q53RE8 183 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 NBEAQ8NFP9 2946 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 COL4A2P08572 1712 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 NPC2P61916 151 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 SAMD13Q5VXD3 122 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 TTTY13Q9BZ97 58 aa12.16□□□□□ -0.46
CUX1-211ENST00000546411 PCP2Q8IVA1 136 aa12.15□□□□□ -0.46
CUX1-211ENST00000546411 MTURNQ8N3F0 131 aa12.15□□□□□ -0.46
CUX1-211ENST00000546411 WI2-2373I1.2A0A1W2PRP0 233 aa12.15□□□□□ -0.46
CUX1-211ENST00000546411 TMEM262E9PQX1 116 aa12.15□□□□□ -0.46
CUX1-211ENST00000546411 Q5PR19 223 aa12.15□□□□□ -0.46
CUX1-211ENST00000546411 SLC25A16P16260 332 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 CHAC1Q9BUX1 264 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 SMPXQ9UHP9 88 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 C19orf71A6NCJ1 209 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 TCTEX1D4Q5JR98 221 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 XCL2Q9UBD3 114 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 IGHV3-16A0A0C4DH30 117 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 VCYO14598 125 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 UNQ9165/PRO28630Q6UXU0 137 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 TMEM190Q8WZ59 177 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 TP53TG1Q9Y2A0 90 aa12.14□□□□□ -0.47
CUX1-211ENST00000546411 ZNF80P51504 273 aaPredicted RBP12.13□□□□□ -0.47
CUX1-211ENST00000546411 SIRPDQ9H106 197 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 LOXL1Q08397 574 aaPredicted RBP12.13□□□□□ -0.47
CUX1-211ENST00000546411 C5orf56Q8N8D9 126 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 Q8N8P6 123 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 AJUBAQ96IF1 538 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 REV3LO60673 3130 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 COX6CP09669 75 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 FREM2Q5SZK8 3169 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 MYO15AQ9UKN7 3530 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 TRGV11A0A075B6L2 103 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 TRGV1A0A0A0MS02 117 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 GAGE12BA1L429 117 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 COX8AP10176 69 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 Q96MF0 132 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 MLST8Q9BVC4 326 aa12.13□□□□□ -0.47
CUX1-211ENST00000546411 CD5LO43866 347 aa12.12□□□□□ -0.47
CUX1-211ENST00000546411 SAP30O75446 220 aa12.12□□□□□ -0.47
CUX1-211ENST00000546411 LMO4P61968 165 aa12.12□□□□□ -0.47
CUX1-211ENST00000546411 IGHV7-4-1A0A0J9YVY3 117 aa12.12□□□□□ -0.47
CUX1-211ENST00000546411 SDHAF1A6NFY7 115 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms