RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 TMED6Q8WW62 240 aa10.22□□□□□ -0.77
CLSTN3-216ENST00000545663 TRBV19A0A075B6N1 114 aa10.21□□□□□ -0.77
CLSTN3-216ENST00000545663 TRAV5A0A0B4J249 113 aa10.21□□□□□ -0.77
CLSTN3-216ENST00000545663 ODF1Q14990 250 aa10.21□□□□□ -0.77
CLSTN3-216ENST00000545663 FAM74A1Q5RGS3 127 aa10.21□□□□□ -0.77
CLSTN3-216ENST00000545663 MRPL53Q96EL3 112 aaKnown RBP10.21□□□□□ -0.77
CLSTN3-216ENST00000545663 ZNF331Q9NQX6 463 aaPredicted RBP10.21□□□□□ -0.77
CLSTN3-216ENST00000545663 WFDC2Q14508 124 aa10.2□□□□□ -0.78
CLSTN3-216ENST00000545663 TRAV8-2A0A0B4J237 113 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 H3BQ15 152 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 IGLV2-8P01709 118 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 EVI2AP22794 236 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 SULT1A2P50226 295 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 PPT1P50897 306 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 NKX2-5P52952 324 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 ARL6IP6Q8N6S5 226 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 CIRBP-AS1Q8TBR5 109 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 FXYD5Q96DB9 178 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 SAT2Q96F10 170 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 NKX6-2Q9C056 277 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 ICOSQ9Y6W8 199 aa10.19□□□□□ -0.78
CLSTN3-216ENST00000545663 MAP1LC3B2A6NCE7 125 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 CRYGDP07320 174 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 H2AFB1P0C5Y9 115 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 ARL14EPLP0DKL9 152 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 PYYP10082 97 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 GCHFRP30047 84 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 CSN1S1P47710 185 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 PSG3Q16557 428 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 FAM213BQ8TBF2 198 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 MBD3L1Q8WWY6 194 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 CHAC1Q9BUX1 264 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 MAP1LC3BQ9GZQ8 125 aa10.18□□□□□ -0.78
CLSTN3-216ENST00000545663 PAX4O43316 350 aa10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 OR10J4P0C629 311 aa10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 HIST1H1AQ02539 215 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 ZNF738Q8NE65 137 aa10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 SUN5Q8TC36 379 aa10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 BLNKQ8WV28 456 aa10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 ARL2-SNX15V9GYD0 113 aa10.17□□□□□ -0.78
CLSTN3-216ENST00000545663 MUC2Q02817 5179 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 TRAV1-1A0A0B4J248 108 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 BLOC1S1P78537 153 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 CMTM2Q8TAZ6 248 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 SFT2D1Q8WV19 159 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 OTORQ9NRC9 128 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 PPP1R14DQ9NXH3 145 aa10.16□□□□□ -0.78
CLSTN3-216ENST00000545663 TRGV2A0A075B6R0 118 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 SERTM2A0A1B0GWG4 89 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 A0A1W2PRE2 83 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 SNURFLB1AK76 121 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 H7BYZ3 331 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 ZNF324O75467 553 aaPredicted RBP10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 NDUFB4O95168 129 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 IFNA7P01567 189 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 RPL37AP61513 92 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 RANP62826 216 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 ZNF726P1Q15940 193 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 CCDC28AQ8IWP9 274 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 IQCF2Q8IXL9 164 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 RPUSD4Q96CM3 377 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 TCEAL7Q9BRU2 100 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 Q9HAA7 133 aa10.15□□□□□ -0.78
CLSTN3-216ENST00000545663 K7EP13 123 aa10.14□□□□□ -0.79
CLSTN3-216ENST00000545663 SLC17A3O00476 420 aa10.14□□□□□ -0.79
CLSTN3-216ENST00000545663 HMGB3O15347 200 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-216ENST00000545663 TAGLN2P37802 199 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-216ENST00000545663 LPAP08519 4548 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 FBLL1A6NHQ2 334 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 K7EQM0 130 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 LECT2O14960 151 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 IGHV3-53P01767 116 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 SLC25A5P05141 298 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 FHITP49789 147 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 LELP1Q5T871 98 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 ALKAL2Q6UX46 152 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 C5orf17Q8NAS9 161 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 OR8A1Q8NGG7 326 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 TXNDC17Q9BRA2 123 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 BOLA1Q9Y3E2 137 aa10.13□□□□□ -0.79
CLSTN3-216ENST00000545663 RBAKDNA6NC62 111 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 F6UZH7 168 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 H3BTX0 84 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 IFNA1P01562 189 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 CDKN1BP46527 198 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 LINC00477Q96M19 166 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 MANBALQ9NQG1 85 aa10.12□□□□□ -0.79
CLSTN3-216ENST00000545663 PGPA6NDG6 321 aa10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 SNRPCP09234 159 aaKnown RBP10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 FGF8P55075 233 aaPredicted RBP10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 DAZ2Q13117 558 aaKnown RBP10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 TEX261Q6UWH6 196 aa10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 NEGR1Q7Z3B1 354 aa10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 EXOC3-AS1Q8N2X6 119 aa10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 C8orf49Q96NF6 230 aa10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 ODF3Q96PU9 254 aa10.11□□□□□ -0.79
CLSTN3-216ENST00000545663 TRBV7-9A0A0J9YWB2 115 aa10.1□□□□□ -0.79
CLSTN3-216ENST00000545663 MRPL23Q16540 153 aaKnown RBP10.1□□□□□ -0.79
CLSTN3-216ENST00000545663 TMEM78Q5T7P6 136 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms