RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LY6G6EA0A0G2JKS1 128 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 ATP6V0E1O15342 81 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 IGLC1P0CG04 106 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 HIST1H4AP62805 103 aaKnown RBP6.16□□□□□ -1.42
VPS13D-211ENST00000543710 U3KQA8 63 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 ATOX1O00244 68 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 Q6ZRM9 215 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 DEFB125Q8N687 156 aa6.16□□□□□ -1.42
VPS13D-211ENST00000543710 IGLL5B9A064 214 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 NDUFS7O75251 213 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 NDUFC2O95298 119 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 C9orf47Q6ZRZ4 202 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 OTOGLQ3ZCN5 2332 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 CACNA1IQ9P0X4 2223 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 PCNX1Q96RV3 2341 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 TRAV8-3A0A0A6YYJ7 113 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 FOXG1P55316 489 aaPredicted RBP6.15□□□□□ -1.42
VPS13D-211ENST00000543710 NRGNQ92686 78 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 TIMM17AQ99595 171 aa6.15□□□□□ -1.42
VPS13D-211ENST00000543710 J3QQQ9 107 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 ZNF561-AS1K7EIQ3 104 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 HIST2H2BCQ6DN03 193 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 LINC00482Q8N8I6 264 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 ZC2HC1AQ96GY0 325 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 S4R3C0 116 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 SPTBN1Q01082 2364 aaKnown RBP6.15□□□□□ -1.43
VPS13D-211ENST00000543710 V9GYY9 64 aa6.15□□□□□ -1.43
VPS13D-211ENST00000543710 C12orf74Q32Q52 190 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 GAGE12HA6NDE8 117 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 C11orf45Q8TAV5 145 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 DOCK3Q8IZD9 2030 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 CTRLP40313 264 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 NDUFA12Q9UI09 145 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 KIF26AQ9ULI4 1882 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-211ENST00000543710 MYO7BQ6PIF6 2116 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV3-49A0A0A0MS15 119 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 ATP5EP2Q5VTU8 51 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 LYPD2Q6UXB3 125 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 WDR86Q86TI4 376 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-211ENST00000543710 ZNF747Q9BV97 191 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 LINC00527Q9UJ94 153 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 FAM215AQ9Y5M1 114 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 SCN5AQ14524 2016 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 SDHAF1A6NFY7 115 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 JMJD7-PLA2G4BH0Y9G9 81 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 DKK1O94907 266 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 ATP5EP56381 51 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-211ENST00000543710 C7orf33Q8WU49 177 aa6.14□□□□□ -1.43
VPS13D-211ENST00000543710 TRAV8-1A0A0A6YYK1 113 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 K7EQD1 137 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 CRYGCP07315 174 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV4-31P0DP07 118 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 ANXA2RQ3ZCQ2 193 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 U3KQE9 123 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 LY6HO94772 140 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 CFC1BP0CG36 223 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 CFC1P0CG37 223 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 CARD19Q96LW7 228 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 K7EN84 100 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV4-59P01825 116 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 LINC00574Q9H8X3 128 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 LINC01548A6NM66 108 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 H3BT86 120 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 LINC01620Q4KN68 170 aa6.13□□□□□ -1.43
VPS13D-211ENST00000543710 DUX4L9Q6RFH8 374 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-211ENST00000543710 A0A0J9YXY3 114 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 P0DMU3 169 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 FAM231AP0DMU4 169 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 FAM231CP0DMU5 169 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 MDFICQ9P1T7 246 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV3OR16-13A0A075B7E8 117 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV3-74A0A0B4J1X5 117 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 IGHV3-35A0A0C4DH35 117 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 TMEM213A2RRL7 107 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 FGF6P10767 208 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 C11orf1Q9H5F2 150 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 CUL9Q8IWT3 2517 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 I3L2K1 104 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 SPATA12Q7Z6I5 190 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 RP1P56715 2156 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 C10orf55Q5SWW7 151 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 Q6ZR03 302 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 ZNF491Q8N8L2 437 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 MRPL36Q9P0J6 103 aaKnown RBP6.12□□□□□ -1.43
VPS13D-211ENST00000543710 ACACBO00763 2458 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 PCM1Q15154 2024 aa6.12□□□□□ -1.43
VPS13D-211ENST00000543710 IGKV1-16P04430 117 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 IGLL1P15814 213 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 DEFB131AP59861 70 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 C4orf3Q8WVX3 66 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 UBE2BP63146 152 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 Q8TAT8 98 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 MUC7Q8TAX7 377 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 IGLV11-55A0A075B6I3 123 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 SPRY2O43597 315 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 TCTEX1D4Q5JR98 221 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 ICOSQ9Y6W8 199 aa6.11□□□□□ -1.43
VPS13D-211ENST00000543710 BDP1A6H8Y1 2624 aa6.1□□□□□ -1.43
VPS13D-211ENST00000543710 LYPD6Q86Y78 171 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms