RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 TMEM75Q8N9X5 138 aa6.8□□□□□ -1.32
YBX3-212ENST00000542002 MRPL16Q9NX20 251 aaKnown RBP6.8□□□□□ -1.32
YBX3-212ENST00000542002 NAGKQ9UJ70 344 aa6.8□□□□□ -1.32
YBX3-212ENST00000542002 TRAV26-1A0A087WT03 109 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 TRAV21A0A0B4J279 112 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 IGHV3-16A0A0C4DH30 117 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 PEX7O00628 323 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 GCGP01275 180 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 H2AFB1P0C5Y9 115 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 CRIP1P50238 77 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 CST9LP1Q5W188 147 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 FAM159AQ6UWV7 190 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 C9orf62Q8N4C0 152 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 POM121L12Q8N7R1 296 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 C18orf15Q96N68 181 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 ARL2-SNX15V9GYD0 113 aa6.79□□□□□ -1.32
YBX3-212ENST00000542002 TRGV2A0A075B6R0 118 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 A0A0J9YY99 117 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 K7EQM0 130 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 NUDT3O95989 172 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 TYMSP04818 313 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 P0DMU3 169 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 FAM231AP0DMU4 169 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 FAM231CP0DMU5 169 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 EIF5AP63241 154 aaKnown RBP6.78□□□□□ -1.32
YBX3-212ENST00000542002 LGALS9BQ3B8N2 356 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 DPPA3Q6W0C5 159 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 RASL10AQ92737 203 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 HIST1H2BAQ96A08 127 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 VSIG2Q96IQ7 327 aa6.78□□□□□ -1.32
YBX3-212ENST00000542002 NKX6-2Q9C056 277 aaPredicted RBP6.78□□□□□ -1.32
YBX3-212ENST00000542002 BIRC6Q9NR09 4857 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 IGKV3D-20A0A0C4DH25 116 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 IGHV3-53P01767 116 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 PFN1P07737 140 aaKnown RBP6.77□□□□□ -1.33
YBX3-212ENST00000542002 NKX2-5P52952 324 aaPredicted RBP6.77□□□□□ -1.33
YBX3-212ENST00000542002 ZNF415Q09FC8 603 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 FHL2Q14192 279 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 SMUG1Q53HV7 270 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 SAPCD1Q5SSQ6 148 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 SLC51BQ86UW2 128 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 ZC2HC1AQ96GY0 325 aa6.77□□□□□ -1.33
YBX3-212ENST00000542002 FAT2Q9NYQ8 4349 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 TRGV11A0A075B6L2 103 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 TRAV1-1A0A0B4J248 108 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 SFTA3P0C7M3 94 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 SULT1A2P50226 295 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 COX8CQ7Z4L0 72 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 Q86TA4 180 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 C15orf53Q8NAA6 179 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 ZNF479Q96JC4 524 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 NDFIP1Q9BT67 221 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 SDF2L1Q9HCN8 221 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 LINC00588Q9Y4M8 146 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 DNAH17Q9UFH2 4485 aa6.76□□□□□ -1.33
YBX3-212ENST00000542002 TRBV6-1A0A0K0K1D8 114 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 SCO2A0A1W2PP80 73 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 FBLL1A6NHQ2 334 aaKnown RBP6.75□□□□□ -1.33
YBX3-212ENST00000542002 M0R2N4 97 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 LTAP01374 205 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 RNASE3P12724 160 aaKnown RBP6.75□□□□□ -1.33
YBX3-212ENST00000542002 RAB5CP51148 216 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 ESRGQ1W209 222 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 RNF212Q495C1 297 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 FMC1Q96HJ9 113 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 SPXQ9BT56 116 aa6.75□□□□□ -1.33
YBX3-212ENST00000542002 IGLV2-18A0A075B6J9 118 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 A0A096LPF7 62 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 PGPEP1LA6NFU8 196 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 FABP5P3A8MUU1 101 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 M0R2P5 195 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 PPT1P50897 306 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 ZFP69Q49AA0 526 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 EIF5AL1Q6IS14 154 aaKnown RBP6.74□□□□□ -1.33
YBX3-212ENST00000542002 NHLRC2Q8NBF2 726 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 KCNS1Q96KK3 526 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 C9orf85Q96MD7 179 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 TCEAL7Q9BRU2 100 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 MLST8Q9BVC4 326 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 GNG13Q9P2W3 67 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 HHLA3Q9XRX5 114 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 ZFP30Q9Y2G7 519 aa6.74□□□□□ -1.33
YBX3-212ENST00000542002 KRBOX1C9JBD0 128 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 C9JCJ5 164 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 H3BNG1 76 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 SH2D1AO60880 128 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 CRYBA4P53673 196 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 ZNF674Q2M3X9 581 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 Q6ZR54 194 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 UBE2DNLQ8IWF7 75 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 ZNRF2Q8NHG8 242 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 DERL1Q9BUN8 251 aa6.73□□□□□ -1.33
YBX3-212ENST00000542002 GRIFINA4D1Z8 144 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 PAX4O43316 350 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 ORM1P02763 201 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 AKR1C3P42330 323 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 UBE2G1P62253 170 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 ZNF876PQ49A33 203 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 ALKAL2Q6UX46 152 aa6.72□□□□□ -1.33
YBX3-212ENST00000542002 PRO0255Q9UI72 69 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms