RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TTC32Q5I0X7 151 aa11□□□□□ -0.65
USP3-204ENST00000540797 WIPF2Q8TF74 440 aaPredicted RBP11□□□□□ -0.65
USP3-204ENST00000540797 RHOHQ15669 191 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 NEGR1Q7Z3B1 354 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 LENEPQ9Y5L5 61 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 A8MWP6 167 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 SRSF2Q01130 221 aaKnown RBP10.99□□□□□ -0.65
USP3-204ENST00000540797 NDUFAF3Q9BU61 184 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 CHAC1Q9BUX1 264 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 DENND4AQ7Z401 1863 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 LTAP01374 205 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 HLA-DRB4P13762 266 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 HLA-DRB4X5D2U9 266 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 DNAJC9-AS1A6NH13 148 aa10.99□□□□□ -0.65
USP3-204ENST00000540797 WFDC11Q8NEX6 87 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 NCOR2Q9Y618 2525 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 C22orf34Q6ZV56 151 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 ZNF625Q96I27 306 aaPredicted RBP10.98□□□□□ -0.65
USP3-204ENST00000540797 ZNF479Q96JC4 524 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 SMIM27A0A1W2PRY6 76 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 TMEM89A2RUT3 159 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 ODF3L1Q8IXM7 274 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 C18orf32Q8TCD1 76 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 A6NDX4 124 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 C2orf70A6NJV1 201 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 VWC2LB2RUY7 222 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 ANGP03950 147 aaKnown RBP10.98□□□□□ -0.65
USP3-204ENST00000540797 C16orf54Q6UWD8 224 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 CITED2Q99967 270 aaPredicted RBP10.98□□□□□ -0.65
USP3-204ENST00000540797 CSPG4Q6UVK1 2322 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 TNFRSF13BO14836 293 aaPredicted RBP10.98□□□□□ -0.65
USP3-204ENST00000540797 PMVKQ15126 192 aa10.98□□□□□ -0.65
USP3-204ENST00000540797 TEX22C9J3V5 150 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 Q0VG73 95 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 ASPHD1Q5U4P2 390 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 C4orf3Q8WVX3 66 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 CGB3P0DN86 165 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 LOC105371267A0A1B0GV96 52 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 CRYGCP07315 174 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 ESDP10768 282 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 ATXN8Q156A1 80 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 EP400Q96L91 3159 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 NCKAP5O14513 1909 aa10.97□□□□□ -0.65
USP3-204ENST00000540797 PCDH15Q96QU1 1955 aa10.96□□□□□ -0.65
USP3-204ENST00000540797 INS-IGF2F8WCM5 200 aa10.96□□□□□ -0.65
USP3-204ENST00000540797 CFHR4Q92496 578 aa10.96□□□□□ -0.65
USP3-204ENST00000540797 FREM1Q5H8C1 2179 aa10.96□□□□□ -0.65
USP3-204ENST00000540797 IGHV4-31P0DP07 118 aa10.96□□□□□ -0.65
USP3-204ENST00000540797 BUB3O43684 328 aa10.96□□□□□ -0.66
USP3-204ENST00000540797 C10orf126Q8N4M7 172 aa10.96□□□□□ -0.66
USP3-204ENST00000540797 IGHV1-24A0A0C4DH33 117 aa10.96□□□□□ -0.66
USP3-204ENST00000540797 PLCE1Q9P212 2302 aa10.96□□□□□ -0.66
USP3-204ENST00000540797 EGR2P11161 476 aaPredicted RBP10.95□□□□□ -0.66
USP3-204ENST00000540797 SMIM2Q9BVW6 85 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 K7EMT4 169 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 HIST2H2BCQ6DN03 193 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 GPHB5Q86YW7 130 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 SPART-AS1P0CW21 52 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 TEX48A0A1B0GUV7 120 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 F8WEM9 126 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 RNF152Q8N8N0 203 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 C16orf74Q96GX8 76 aa10.95□□□□□ -0.66
USP3-204ENST00000540797 TRAV8-2A0A0B4J237 113 aa10.94□□□□□ -0.66
USP3-204ENST00000540797 NPYP01303 97 aa10.94□□□□□ -0.66
USP3-204ENST00000540797 PFN2P35080 140 aa10.94□□□□□ -0.66
USP3-204ENST00000540797 SAMD5Q5TGI4 173 aa10.94□□□□□ -0.66
USP3-204ENST00000540797 ZNF493Q6ZR52 646 aa10.94□□□□□ -0.66
USP3-204ENST00000540797 CLPSL2Q6UWE3 100 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 LAMTOR3Q9UHA4 124 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 TRAV25A0A0B4J276 109 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 PATE2Q6UY27 113 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 STPG4Q8N801 248 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 C20orf78Q9BR46 151 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 EML6Q6ZMW3 1958 aa10.93□□□□□ -0.66
USP3-204ENST00000540797 CD5LO43866 347 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 A0A087X0K7 114 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 ATP5G1P05496 136 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 KLF5Q13887 457 aaPredicted RBP10.92□□□□□ -0.66
USP3-204ENST00000540797 NKAPP1Q8N9T2 125 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 SIGLEC8Q9NYZ4 499 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 ZNF106Q9H2Y7 1883 aaKnown RBP10.92□□□□□ -0.66
USP3-204ENST00000540797 KIAA1549LQ6ZVL6 1849 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 WI2-2373I1.2A0A1W2PRP0 233 aa10.92□□□□□ -0.66
USP3-204ENST00000540797 DLX4Q92988 240 aaPredicted RBP10.92□□□□□ -0.66
USP3-204ENST00000540797 IGKV2D-24A0A075B6R9 120 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 ODF3BA8MYP8 253 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 E7EUB6 86 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 SPRY2O43597 315 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 IGLV2-14P01704 120 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 IGKV1OR2-108A0A075B7D4 117 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 INAFM1C9JVW0 142 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 MORN5Q5VZ52 161 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 LURAP1LQ8IV03 231 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 ATRXP46100 2492 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 K7EN84 100 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 CGB7P0DN87 165 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 ADAMTSL5Q6ZMM2 481 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 SMAD5-AS1Q9Y6J3 95 aa10.91□□□□□ -0.66
USP3-204ENST00000540797 A0A1B0GV72 72 aa10.9□□□□□ -0.66
USP3-204ENST00000540797 NXPH4O95158 308 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms