RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 VMO1Q7Z5L0 202 aa4.89□□□□□ -1.63
SYNE1-233ENST00000535896 LHFPL4Q7Z7J7 247 aa4.89□□□□□ -1.63
SYNE1-233ENST00000535896 CSTL1Q9H114 145 aa4.89□□□□□ -1.63
SYNE1-233ENST00000535896 TEX15Q9BXT5 2789 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 IGLV2-18A0A075B6J9 118 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 IGHV7-81A0A0B4J1V7 117 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 LOC389332A0A1B0GUA5 103 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 G3V4G9 280 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 J3KRW8 73 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 M0R381 172 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 BRI3O95415 125 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 IGHG4P01861 327 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 ORM1P02763 201 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 FAM106CPP0CH98 169 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 LEPP41159 167 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 NMUP48645 174 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 CRIP2P52943 208 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-233ENST00000535896 NDPQ00604 133 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 HES1Q14469 280 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 FAM106AQ4KMX7 169 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 ORMDL2Q53FV1 153 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 TMEM78Q5T7P6 136 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 PRSS57Q6UWY2 283 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 C9orf47Q6ZRZ4 202 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 C9orf139Q6ZV77 190 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 Q71RC1 249 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-233ENST00000535896 ERASQ7Z444 233 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 DTX2Q86UW9 622 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 VGLL1Q99990 258 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 CHAC1Q9BUX1 264 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 TP73-AS1Q9UF72 201 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 HHLA3Q9XRX5 114 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 SPCS1Q9Y6A9 102 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 SMAD5-AS1Q9Y6J3 95 aa4.88□□□□□ -1.63
SYNE1-233ENST00000535896 MYO9AB2RTY4 2548 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 CSMD1Q96PZ7 3565 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 TMSB15BA0A087X1C1 80 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 CENPVL3A0A0U1RRI6 287 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 A0A1W2PPR1 153 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 H3BUT2 72 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 J3QR89 54 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 SCGB1A1P11684 91 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 ZNF80P51504 273 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-233ENST00000535896 UBE2E1P51965 193 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 LAGE3Q14657 143 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 RNF151Q2KHN1 245 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 SAMD13Q5VXD3 122 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 HIST2H2BCQ6DN03 193 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 ZNF575Q86XF7 245 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 MYOZ3Q8TDC0 251 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 EEF1AKMT3Q96AZ1 226 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 CLUHP3Q96NS8 147 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 JMJD8Q96S16 334 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 METTL26Q96S19 204 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 C20orf78Q9BR46 151 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 UBTD1Q9HAC8 227 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 TIMM8BQ9Y5J9 83 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-233ENST00000535896 HILPDAQ9Y5L2 63 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 U3KQE9 123 aa4.87□□□□□ -1.63
SYNE1-233ENST00000535896 MAP1AP78559 2803 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-233ENST00000535896 ABCA1O95477 2261 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 TRBV25-1A0A075B6N4 114 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 A0A087WX48 190 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 A0A1W2PRD5 423 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 A0A1W2PRF3 423 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 A0A1W2PRM7 423 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 FAM223BA6NKX1 122 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 NCBP2LA6PVI3 153 aaKnown RBP4.86□□□□□ -1.63
SYNE1-233ENST00000535896 F8W1H4 67 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 RPL32P62910 135 aaKnown RBP4.86□□□□□ -1.63
SYNE1-233ENST00000535896 C15orf32Q32M92 178 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 WFDC3Q8IUB2 231 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 FAM223AQ8IWN6 122 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 CEND1Q8N111 149 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 DYNAPQ8N1N2 210 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 NRACQ8N912 160 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 Q8N9W7 124 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 Q8TAT8 98 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 TMEM158Q8WZ71 300 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 CCL19Q99731 98 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 MCRIP2Q9BUT9 160 aaKnown RBP4.86□□□□□ -1.63
SYNE1-233ENST00000535896 SIRPDQ9H106 197 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 MEGF9Q9H1U4 602 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 DKK2Q9UBU2 259 aa4.86□□□□□ -1.63
SYNE1-233ENST00000535896 IGKV3D-20A0A0C4DH25 116 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 IGHV7-4-1A0A0J9YVY3 117 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 A0A1B0GWB2 263 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 F8VRH5 84 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-233ENST00000535896 H3BUA1 57 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 CLEC3BP05452 202 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 PRSS1P07477 247 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 DLX1P56177 255 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 KRTAP10-9P60411 292 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 PAPPA-AS1Q5QFB9 102 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 PRR31Q5SQ13 230 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 ZC2HC1BQ5TFG8 222 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 PCP2Q8IVA1 136 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 PHLDA1Q8WV24 401 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms